Literature DB >> 34022208

Fine Sampling of Sequence Space for Membrane Protein Structural Biology.

Michael Loukeris1, Zahra Assur Sanghai2, Jeremie Vendome3, Wayne A Hendrickson4, Brian Kloss5, Filippo Mancia6.   

Abstract

We describe an enhancement of traditional genomics-based approaches to improve the success of structure determination of membrane proteins. Following a broad screen of sequence space to identify initial expression-positive targets, we employ a second step to select orthologs with closely related sequences to these hits. We demonstrate that a greater percentage of these latter targets express well and are stable in detergent, increasing the likelihood of identifying candidates that will ultimately yield structural information.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  high throughput biology; integral membrane proteins; protein expression; protein purification; structural biology; structural genomics

Mesh:

Substances:

Year:  2021        PMID: 34022208      PMCID: PMC8286341          DOI: 10.1016/j.jmb.2021.167055

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   6.151


  31 in total

Review 1.  Structural genomics on membrane proteins: mini review.

Authors:  K Lundstrom
Journal:  Comb Chem High Throughput Screen       Date:  2004-08       Impact factor: 1.339

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Authors:  C Aslanidis; P J de Jong
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

Review 3.  Life in the fast lane for protein crystallization and X-ray crystallography.

Authors:  Marc L Pusey; Zhi-Jie Liu; Wolfram Tempel; Jeremy Praissman; Dawei Lin; Bi-Cheng Wang; José A Gavira; Joseph D Ng
Journal:  Prog Biophys Mol Biol       Date:  2005-07       Impact factor: 3.667

Review 4.  High throughput crystallography at SGC Toronto: an overview.

Authors:  Alexey Bochkarev; Wolfram Tempel
Journal:  Methods Mol Biol       Date:  2008

5.  Amphipols: polymers that keep membrane proteins soluble in aqueous solutions.

Authors:  C Tribet; R Audebert; J L Popot
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-24       Impact factor: 11.205

Review 6.  Membrane proteins, detergents and crystals: what is the state of the art?

Authors:  Patrick J Loll
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-11-28       Impact factor: 1.056

Review 7.  Structural genomics plucks high-hanging membrane proteins.

Authors:  Edda Kloppmann; Marco Punta; Burkhard Rost
Journal:  Curr Opin Struct Biol       Date:  2012-05-21       Impact factor: 6.809

8.  Mutations that stabilize folding intermediates of phage P22 tailspike protein: folding in vivo and in vitro, stability, and structural context.

Authors:  M Beissinger; S C Lee; S Steinbacher; P Reinemer; R Huber; M H Yu; R Seckler
Journal:  J Mol Biol       Date:  1995-05-26       Impact factor: 5.469

9.  The New York Consortium on Membrane Protein Structure (NYCOMPS): a high-throughput platform for structural genomics of integral membrane proteins.

Authors:  James Love; Filippo Mancia; Lawrence Shapiro; Marco Punta; Burkhard Rost; Mark Girvin; Da-Neng Wang; Ming Zhou; John F Hunt; Thomas Szyperski; Eric Gouaux; Roderick MacKinnon; Ann McDermott; Barry Honig; Masayori Inouye; Gaetano Montelione; Wayne A Hendrickson
Journal:  J Struct Funct Genomics       Date:  2010-08-06

10.  Structural genomics target selection for the New York consortium on membrane protein structure.

Authors:  Marco Punta; James Love; Samuel Handelman; John F Hunt; Lawrence Shapiro; Wayne A Hendrickson; Burkhard Rost
Journal:  J Struct Funct Genomics       Date:  2009-10-27
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