Literature DB >> 34016740

Structural and functional ramifications of antigenic drift in recent SARS-CoV-2 variants.

Meng Yuan1, Deli Huang2, Chang-Chun D Lee1, Nicholas C Wu3,4, Abigail M Jackson1, Xueyong Zhu1, Hejun Liu1, Linghang Peng2, Marit J van Gils5, Rogier W Sanders5,6, Dennis R Burton2,7, S Momsen Reincke8,9, Harald Prüss8,9, Jakob Kreye8,9, David Nemazee2, Andrew B Ward1, Ian A Wilson10,11.   

Abstract

Neutralizing antibodies (nAbs) elicited against the receptor-binding site (RBS) of the spike protein of wild-type SARS-CoV-2 are generally less effective against recent variants of concern. RBS residues E484, K417 and N501 are mutated in variants first described in South Africa (B.1.351) and Brazil (P.1). We analyzed their effects on ACE2 binding and K417N and E484K mutations on nAbs isolated from COVID-19 patients. Binding and neutralization of the two most frequently elicited antibody families (IGHV3-53/3-66 and IGHV1-2), which can both bind the RBS in alternate binding modes, are abrogated by K417N, E484K, or both. These effects can be structurally explained by their extensive interactions with RBS nAbs. However, nAbs to the more conserved, cross-neutralizing CR3022 and S309 sites were largely unaffected. The results have implications for next-generation vaccines and antibody therapies.
Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY).

Entities:  

Year:  2021        PMID: 34016740     DOI: 10.1126/science.abh1139

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  128 in total

1.  Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.

Authors:  Darren P Martin; Spyros Lytras; Alexander G Lucaci; Wolfgang Maier; Björn Grüning; Stephen D Shank; Steven Weaver; Oscar A MacLean; Richard J Orton; Philippe Lemey; Maciej F Boni; Houriiyah Tegally; Gordon Harkins; Cathrine Scheepers; Jinal N Bhiman; Josie Everatt; Daniel G Amoako; James Emmanuel San; Jennifer Giandhari; Alex Sigal; Carolyn Williamson; Nei-Yuan Hsiao; Anne von Gottberg; Arne De Klerk; Robert W Shafer; David L Robertson; Robert J Wilkinson; B Trevor Sewell; Richard Lessells; Anton Nekrutenko; Allison J Greaney; Tyler N Starr; Jesse D Bloom; Ben Murrell; Eduan Wilkinson; Ravindra K Gupta; Tulio de Oliveira; Sergei L Kosakovsky Pond
Journal:  bioRxiv       Date:  2022-01-18

Review 2.  Monoclonal antibodies for COVID-19 therapy and SARS-CoV-2 detection.

Authors:  Yu-Chyi Hwang; Ruei-Min Lu; Shih-Chieh Su; Pao-Yin Chiang; Shih-Han Ko; Feng-Yi Ke; Kang-Hao Liang; Tzung-Yang Hsieh; Han-Chung Wu
Journal:  J Biomed Sci       Date:  2022-01-04       Impact factor: 8.410

3.  Molecular basis of receptor binding and antibody neutralization of Omicron.

Authors:  Qin Hong; Wenyu Han; Jiawei Li; Shiqi Xu; Yifan Wang; Cong Xu; Zuyang Li; Yanxing Wang; Chao Zhang; Zhong Huang; Yao Cong
Journal:  Nature       Date:  2022-02-28       Impact factor: 49.962

4.  Mapping SARS-CoV-2 antigenic relationships and serological responses.

Authors:  Samuel H Wilks; Barbara Mühlemann; Xiaoying Shen; Sina Türeli; Eric B LeGresley; Antonia Netzl; Miguela A Caniza; Jesus N Chacaltana-Huarcaya; Victor M Corman; Xiaoju Daniell; Michael B Datto; Fatimah S Dawood; Thomas N Denny; Christian Drosten; Ron A M Fouchier; Patricia J Garcia; Peter J Halfmann; Agatha Jassem; Lara M Jeworowski; Terry C Jones; Yoshihiro Kawaoka; Florian Krammer; Charlene McDanal; Rolando Pajon; Viviana Simon; Melissa S Stockwell; Haili Tang; Harm van Bakel; Vic Veguilla; Richard Webby; David C Montefiori; Derek J Smith
Journal:  bioRxiv       Date:  2022-07-13

5.  Correlates of Neutralization against SARS-CoV-2 Variants of Concern by Early Pandemic Sera.

Authors:  Samuel J Vidal; Ai-Ris Y Collier; Jingyou Yu; Katherine McMahan; Lisa H Tostanoski; John D Ventura; Malika Aid; Lauren Peter; Catherine Jacob-Dolan; Tochi Anioke; Aiquan Chang; Huahua Wan; Ricardo Aguayo; Debby Ngo; Robert E Gerszten; Michael S Seaman; Dan H Barouch
Journal:  J Virol       Date:  2021-06-24       Impact factor: 5.103

Review 6.  Chitosan Nanoparticles for Antiviral Drug Delivery: A Novel Route for COVID-19 Treatment.

Authors:  Abdel-Majed Safer; Stefano Leporatti
Journal:  Int J Nanomedicine       Date:  2021-12-16

Review 7.  COVID-19 Vaccines: Adenoviral Vectors.

Authors:  Catherine Jacob-Dolan; Dan H Barouch
Journal:  Annu Rev Med       Date:  2021-10-05       Impact factor: 13.739

8.  Mapping mutations to the SARS-CoV-2 RBD that escape binding by different classes of antibodies.

Authors:  Allison J Greaney; Tyler N Starr; Christopher O Barnes; Yiska Weisblum; Fabian Schmidt; Marina Caskey; Christian Gaebler; Alice Cho; Marianna Agudelo; Shlomo Finkin; Zijun Wang; Daniel Poston; Frauke Muecksch; Theodora Hatziioannou; Paul D Bieniasz; Davide F Robbiani; Michel C Nussenzweig; Pamela J Bjorkman; Jesse D Bloom
Journal:  Nat Commun       Date:  2021-07-07       Impact factor: 14.919

9.  The pivotal roles of the host immune response in the fine-tuning the infection and the development of the vaccines for SARS-CoV-2.

Authors:  Wael Alturaiki; Ayman Mubarak; Abduallah Al Jurayyan; Maged Gomaa Hemida
Journal:  Hum Vaccin Immunother       Date:  2021-06-11       Impact factor: 3.452

10.  Sequence signatures of two public antibody clonotypes that bind SARS-CoV-2 receptor binding domain.

Authors:  Timothy J C Tan; Meng Yuan; Kaylee Kuzelka; Gilberto C Padron; Jacob R Beal; Xin Chen; Yiquan Wang; Joel Rivera-Cardona; Xueyong Zhu; Beth M Stadtmueller; Christopher B Brooke; Ian A Wilson; Nicholas C Wu
Journal:  Nat Commun       Date:  2021-06-21       Impact factor: 14.919

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