Literature DB >> 34013462

Ionic bond in hydrogen transferring of the ferrous and/or ferric human/mouse verdoheme oxygenase.

Hamideh Tasharofi1, Maryam Daghighi Asli2, Parisa Rajabali Jamaat3.   

Abstract

Formation of five coordinated ferric (ferrous) verdoheme oxygenase complexes have been investigated at ωB97X-D/6-31G(d) level of theory. This process was carried out by adsorption of imidazole and human/mouse verdoheme oxygenase (VO) compounds. Global reactivity indexes show electrophile and nucleophile roles of the VO complexes and Imidazole, respectively. This result confirms their interaction, molecular electrostatic potential (MEP) maps, and low HOMOFRVMO-LUMOImidazole gap. These interactions can cause in adsorption and five coordinated of the VO complexes. More negative value (-64.3 kJ mol-1) of adsorption energy (Eads) in the FRVMO complex shows better adsorption strength and stable configuration. Significant point of this interaction is hydrogen transfer from imidazole to the nearest oxygen of the VO complexes; this issue is approved using quantum theory of atom in molecule (QTAIM) and natural bond orbital (NBO) analysis. QTAIM calculations confirm ionic bonding between the transferred hydrogen and the oxygen atom of the VO. The 312.2-kcal mol-1 s order stabilization energies in this complex are confirmation for strong donation and better formation of five coordinated complex in electron view point.

Entities:  

Keywords:  Molecular electrostatic potential (MEP); QTAIM and NBO analysis; Total density of state (DOS); Verdoheme oxygenase

Mesh:

Substances:

Year:  2021        PMID: 34013462     DOI: 10.1007/s00894-021-04762-9

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  12 in total

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3.  Nitric oxide acutely modulates hypothalamic and neurohypophyseal carbon monoxide and hydrogen sulphide production to control vasopressin, oxytocin and atrial natriuretic peptide release in rats.

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Journal:  J Neuroendocrinol       Date:  2019-02-12       Impact factor: 3.627

4.  Reduction of oxaporphyrin ring of CO-bound α-verdoheme complexed with heme oxygenase-1 by NADPH-cytochrome P450 reductase.

Authors:  Hideaki Sato; Yuichiro Higashimoto; Hiroshi Sakamoto; Masakazu Sugishima; Chizu Shimokawa; Jiro Harada; Graham Palmer; Masato Noguchi
Journal:  J Inorg Biochem       Date:  2010-11-26       Impact factor: 4.155

5.  QM/MM Study of the Conversion of Oxophlorin into Verdoheme by Heme Oxygenase.

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Journal:  J Phys Chem B       Date:  2017-12-13       Impact factor: 2.991

6.  The reactions of heme- and verdoheme-heme oxygenase-1 complexes with FMN-depleted NADPH-cytochrome P450 reductase. Electrons required for verdoheme oxidation can be transferred through a pathway not involving FMN.

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7.  Theoretical investigations on the hydrolysis pathway of tin verdoheme complexes: elucidation of tin's ring opening inhibition role.

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Journal:  Trends Endocrinol Metab       Date:  2017-12-14       Impact factor: 12.015

9.  Crystal structure of rat haem oxygenase-1 in complex with ferrous verdohaem: presence of a hydrogen-bond network on the distal side.

Authors:  Hideaki Sato; Masakazu Sugishima; Hiroshi Sakamoto; Yuichiro Higashimoto; Chizu Shimokawa; Keiichi Fukuyama; Graham Palmer; Masato Noguchi
Journal:  Biochem J       Date:  2009-04-15       Impact factor: 3.857

10.  Heme detoxification by heme oxygenase-1 reinstates proliferative and immune balances upon genotoxic tissue injury.

Authors:  Andreas Hedblom; Seyed M Hejazi; Giacomo Canesin; Reeham Choudhury; Khalid A Hanafy; Eva Csizmadia; Jenny L Persson; Barbara Wegiel
Journal:  Cell Death Dis       Date:  2019-01-25       Impact factor: 8.469

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