| Literature DB >> 34012708 |
M Babawale1, A Gunavardhan1, J Walker2, T Corfield1, P Huey1, A Savage1, A Bansal1, M Atkinson1, H Abdelsalam1, E Raweily1, A Christian3, I Evangelou3, D Thomas3, J Shannon4, E Youd4, P Brumwell4, J Harrison5, I Thompson5, M Rashid5, G Leopold6, A Finall6,7, S Roberts8, D Housa9, P Nedeva9, A Davies1, D Fletcher1, Muhammad Aslam1.
Abstract
AIMS: The study is aimed to verify Aperio AT2 scanner for reporting on the digital pathology platform (DP) and to validate the cohort of pathologists in the interpretation of DP for routine diagnostic histopathological services in Wales, United Kingdom. MATERIALS METHODS ANDEntities:
Keywords: Concordance; diagnosis; digital pathology; glass slides; ground truth; light microscopy; scanned slides/whole slide imaging; validation; variances/discrepancies; verification
Year: 2021 PMID: 34012708 PMCID: PMC8112347 DOI: 10.4103/jpi.jpi_55_20
Source DB: PubMed Journal: J Pathol Inform
Chart 1Process flow mapping
Cases reported by pathologists in various health boards
| Welsh health boards | Pathologists | Number of cases reported | Total for health board |
|---|---|---|---|
| Swansea Bay | 1 | 96 | 357 |
| University | 2 | 134 | |
| Health Board | 3 | 127 | |
| Aneurin Bevan | 4 | 98 | 291 |
| University | 5 | 105 | |
| Health Board | 6 | 88 | |
| Betsi Cadwaldr | 7 | 126 | 1146 |
| University | 8 | 48 | |
| Health Board (Hub of the study) | 9 | 105 | |
| 10 | 235 | ||
| 11 | 362 | ||
| 12 | 261 | ||
| 13 | 9 | ||
| Cwm Taf | 14 | 164 | 359 |
| Morgannwg | 15 | 133 | |
| University Health Board | 16 | 62 | |
| Cardiff and | 17 | 168 | 503 |
| Vale University | 18 | 164 | |
| Health Board | 19 | 171 | |
| Hywel Dda University Health Board | 20 | 129 | 345 |
| 21 | 128 | ||
| 22 | 88 | ||
| Total | 3001 |
Summary of slides scanned and data generated in the study
| Biopsies and resections | 3001 |
| Total number of slides | 7491 |
| Total data generated | 3.8 TB |
| Slides per case | |
| Minimum | 1 |
| Maximum | 6 |
| Mean | 2.5 |
| Range of data per slide | |
| Minimum | 67 KB |
| Maximum | 8.3 GB |
| Mean | 500 MB |
Cases, percentages of discordant and clinically significant cases across the subspecialty teams studied
| Subspecialty | Number of cases (percentage of total) | Concordance (%) | Discordant cases (percentage of subspecialty) | Clinically significant discordance (percentage of subspecialty) |
|---|---|---|---|---|
| Skin | 1356 (45.2) | 1298 (95) | 98 (7.2) | 38 (2.8) |
| Gastrointestinal tract | 830 (27.7) | 774 (93.2) | 56 (6.8) | 26 (3.1) |
| Gynaecology | 463 (15.4) | 397 (85.7) | 66 (14.3) | 15 (3.2) |
| Urology | 140 (4.7) | 110 (78.5) | 30 (21.4) | 7 (5.0) |
| Head and neck | 85 (2.8) | 82 (97.6) | 2 (2.4) | 0 (0.0) |
| Soft tissues | 67 (2.2) | 66 (98.5) | 1 (1.5) | 0 (0.0) |
| Breast | 47 (1.6) | 45 (95.7) | 2 (4.3) | 0 (0.0) |
| Other general | 13 (0.4) | 12 (92.3) | 1 (9.1) | 0 (0.0) |
Dermatopathology discrepant cases
| Subspecialty | GS diagnosis | DP diagnosis | Third pathologist/multiheader diagnosis | GT | Number of repeats |
|---|---|---|---|---|---|
| Skin | Lichenoid inflammation and moderate dysplasia | Lichenoid inflammation. No dysplasia seen | Lichenoid inflammation and moderate dysplasia | GS | Undercall of dysplasia on DP, ×12 |
| Skin | Compound melanocytic naevus | Skin showing dysplastic naevus | Compound melanocytic naevus | GS | Overcall of dysplasia on DP, ×4 |
| Skin | Dysplastic junctional naevus | Lentgo maligna | Dysplastic junctional naevus | GS | None |
| Skin | Lentigo maligna with early microinvasion | Junctional melanocytic naevus | Lentigo maligna with early microinvasion | GS | None |
| Skin | Malignant Melanoma in situ in radial growth phase | Severely dysplastic naevus. No evidence of melanoma | Malignant melanoma in situ in radial growth phase | GS | None |
| Skin | Spitz naevus | Malignant melanoma | Spitz naevus | GS | None |
| Skin | Actinic keratosis with moderate squamous atypia | Inflammed seborrheic keratosis | Actinic keratosis with moderate squamous atypia | GS | ×3 |
| Skin | Irritated seborrhoeic keratosis | Hypertrophic actinic keratosis | Hypertrophic actinic keratosis | DP | ×2 |
| Skin | Skin biopsy showing fungal infection and reactive atypia | Chronic nonspecific dermatitis. There is no atypia or malignancy | Pseudo-epitheliomatous hyperplasia secondary to fungal infection | GS | None |
| Skin | A and B: BCC, completely excised | A: BCC, completely excised B: Scanned but not reported | A: BCC, completely excised B: Scanned but not reported | QC issues | Similar QC issues on DP, ×7 |
GS: Glass slide, DP: Digital pathology, GT: Ground truth, BCC: Basal cell carcinoma, QC: Quality control
Clinically significant discrepancies in gastrointestinal tract
| Sub speciality | Glass diagnosis | Digital diagnosis | 3rd pathologist/multi header review diagnosis | Ground truth | Number of repeats |
|---|---|---|---|---|---|
| GIT | Hyperplastic polyp | Tubular adenoma with low grade dysplasia | Hyperplastic polyp | GS | Overcall of dysplasia on DP, ×6 |
| GIT | Barrett’s oesophagus with low grade dysplasia | Barrett’s oesophagus No dysplasia seen | Barrett’s oesophagus with low grade dysplasia | GS | Undercall of dysplasia on DP, ×4 |
| GIT | TVA with high grade dysplasia | Moderately differentiated invasive adenocarcinoma in a TVA with high grade dysplasia | Moderately differentiated invasive adenocarcinoma in a TVA with high grade dysplasia | DP | None |
| GIT | Hyperplastic polyp | Sessile serrated adenoma with low grade dysplasia | Hyperplastic polyp | GS | ×2 |
| GIT | Normal large bowel mucosa | Large bowel mucosa with features of lymphocytic colitis | Normal large bowel mucosa | GS | None |
| GIT | Duodenal mucosa with features of early coeliac disease | Normal duodenal mucosa | Duodenal mucosa with features of early Coeliac disease | GS | None |
| GIT | Nonspecific chronic gastritis | DP | ×2 | ||
| GIT | Nonspecific chronic gastritis | Nonspecific chronic gastritis | GS | ×2 | |
| GIT | Gastric mucosa suggestive of marginal zone lymphoma of MALT type | Gastric mucosa suggestive of marginal zone lymphoma of MALT type | DP | None | |
| GIT | Normal small bowel mucosa | Sections of irritated seborrhoiec keratosis | Pathologist reporting DP wrongly entered a different report on data sheet | QC issues | Misidentifi-cation error, ×1 |
H. pylori: Helicobacter pylori, TVA: Tubulo villous adenoma, DP: Digital pathology, GIT: Gastrointestinal tract, GS: Glass slide, MALT: Mucosaassociated lymphoid tissue
Discrepancy in gynaecologic pathology cases
| Glass diagnosis | Digital diagnosis | 3rd pathologist/multi header review diagnosis | Ground truth | Number of repeats |
|---|---|---|---|---|
| CIN 2 , HPV changes and cervicitis | Cervicitis. No evidence of CIN seen | CIN 2 and HPV changes and cervicitis | GS | Undercall of CIN 2 on DP, ×5 |
| HPV changes and CIN 1 | HPV changes and cervical epithelia changes amounting to CIN 2 | HPV changes and CIN 1 | GS | Overcall of CIN 2 on DP, ×3 |
| CIN 2 with cervicitis | CIN 1 | CIN 1 (upheld by p16 and Ki 67 IHC) | DP | None |
| 2nd trimester placental chorioamnionitis | Normal 2nd trimester placenta | 2nd trimester placental chorioamnionitis | GS | None |
| Chronic salpingitis and endometritis | Chronic salpingitis. No evidence of endometritis | Chronic salpingitis and endometritis | GS | None |
DP: Digital pathology, GIT: Gastrointestinal tract, GS: Glass slide, CIN: Cervical intraepithelial neoplasia, IHC: Immunohistochemistry, HPV: Human papillomavirus
Discrepancies in uropathology
| Subspecialty | Glass diagnosis | Digital diagnosis | Multiheader review diagnosis | Ground truth | Number of repeats |
|---|---|---|---|---|---|
| Urology | Prostatic adenocarcinoma Gleason 6 (3+3) | Focal prostatic adenosis | Prostatic adenocarcinoma Gleason 6 (3+3) | GS | Focal adenocarcinoma called benign on DP, ×5 |
| Urology | Bladder mucosa with focal CIS and suspicious focus of G3 TCC | Ulcerated bladder mucosa with acute on chronic inflammation | Bladder mucosa with focal CIS and suspicious focus of G3 TCC | GS | None |
CIS: Carcinoma in situ, TCC: Transitional cell carcinoma, GS: Glass slide, DP: Digital pathology
Comparison of discrepancies with similar studies in literature
| Snead | Mukhopadhyay | Borowsky | Current study | |
|---|---|---|---|---|
| Overall major discrepancy among pathologists using glass slides (%) | 0.4 | 4.6 | 3.2 | --* |
| Overall major discrepancy between WSI and signed out report (GT) (%) | 0.7 | 4.9 | 3.6 | 2.9 |
| Major discrepancy between WSI and signed out report (GT) in GIT (%) | 0.4 | <1 | 3.3 | 3.1 |
| Major discrepancy between WSI and signed out report (GT) in gynaecological pathology (%) | 0.26 | 3.1 | 3.18 | 3.2 |
| Major discrepancy between WSI and signed out report (GT) in dermatopathology (%) | 0.7 | 4.9 | 4.74 | 2.8 |
| Major discrepancy between WSI and signed out report (GT) in uropathology (%) | 2.4 | 5 | 3 | 5 |
*3%: Average of existing discrepancy rate from Welsh external quality assurance scheme and Glan Clwyd Hospital intra departmental audit. WSI: Whole slide imaging, GIT: Gastrointestinal tract, GT: Ground truth