Literature DB >> 34002345

Ultrafast proton release reaction and primary photochemistry of phycocyanobilin in solution observed with fs-time-resolved mid-IR and UV/Vis spectroscopy.

Maximilian Theiß1, Merten Grupe1, Tilman Lamparter2, Maria Andrea Mroginski3, Rolf Diller4.   

Abstract

Deactivation processes of photoexcited (λex = 580 nm) phycocyanobilin (PCB) in methanol were investigated by means of UV/Vis and mid-IR femtosecond (fs) transient absorption (TA) as well as static fluorescence spectroscopy, supported by density-functional-theory calculations of three relevant ground state conformers, PCBA, PCBB and PCBC, their relative electronic state energies and normal mode vibrational analysis. UV/Vis fs-TA reveals time constants of 2.0, 18 and 67 ps, describing decay of PCBB*, of PCBA* and thermal re-equilibration of PCBA, PCBB and PCBC, respectively, in line with the model by Dietzek et al. (Chem Phys Lett 515:163, 2011) and predecessors. Significant substantiation and extension of this model is achieved first via mid-IR fs-TA, i.e. identification of molecular structures and their dynamics, with time constants of 2.6, 21 and 40 ps, respectively. Second, transient IR continuum absorption (CA) is observed in the region above 1755 cm-1 (CA1) and between 1550 and 1450 cm-1 (CA2), indicative for the IR absorption of highly polarizable protons in hydrogen bonding networks (X-H…Y). This allows to characterize chromophore protonation/deprotonation processes, associated with the electronic and structural dynamics, on a molecular level. The PCB photocycle is suggested to be closed via a long living (> 1 ns), PCBC-like (i.e. deprotonated), fluorescent species.

Entities:  

Keywords:  Bilin; Infrared continuum absorption; Photochemistry; Phycocyanobilin; Proton transfer; Ultrafast spectroscopy

Year:  2021        PMID: 34002345     DOI: 10.1007/s43630-021-00045-7

Source DB:  PubMed          Journal:  Photochem Photobiol Sci        ISSN: 1474-905X            Impact factor:   3.982


  22 in total

Review 1.  Phytochrome: structural basis for its functions.

Authors:  Akira Nagatani
Journal:  Curr Opin Plant Biol       Date:  2010-10       Impact factor: 7.834

2.  Role of the protein cavity in phytochrome chromoprotein assembly and double-bond isomerization: a comparison with model compounds.

Authors:  Thierry Rohmer; Christina Lang; Wolfgang Gärtner; Jon Hughes; Jörg Matysik
Journal:  Photochem Photobiol       Date:  2010-05-10       Impact factor: 3.421

Review 3.  Phytochrome structure and signaling mechanisms.

Authors:  Nathan C Rockwell; Yi-Shin Su; J Clark Lagarias
Journal:  Annu Rev Plant Biol       Date:  2006       Impact factor: 26.379

Review 4.  Near-Infrared Fluorescent Proteins, Biosensors, and Optogenetic Tools Engineered from Phytochromes.

Authors:  Konstantin G Chernov; Taras A Redchuk; Evgeniya S Omelina; Vladislav V Verkhusha
Journal:  Chem Rev       Date:  2017-04-12       Impact factor: 60.622

Review 5.  Phytochrome signaling: solving the Gordian knot with microbial relatives.

Authors:  Richard D Vierstra; Junrui Zhang
Journal:  Trends Plant Sci       Date:  2011-06-28       Impact factor: 18.313

6.  Intramolecular Proton Transfer Controls Protein Structural Changes in Phytochrome.

Authors:  Anastasia Kraskov; Anh Duc Nguyen; Jan Goerling; David Buhrke; Francisco Velazquez Escobar; Maria Fernandez Lopez; Norbert Michael; Luisa Sauthof; Andrea Schmidt; Patrick Piwowarski; Yang Yang; Till Stensitzki; Suliman Adam; Franz Bartl; Igor Schapiro; Karsten Heyne; Friedrich Siebert; Patrick Scheerer; Maria Andrea Mroginski; Peter Hildebrandt
Journal:  Biochemistry       Date:  2020-02-28       Impact factor: 3.162

Review 7.  A brief history of phytochromes.

Authors:  Nathan C Rockwell; J Clark Lagarias
Journal:  Chemphyschem       Date:  2010-04-26       Impact factor: 3.102

8.  The Lumi-R Intermediates of Prototypical Phytochromes.

Authors:  Francisco Velazquez Escobar; Christa Kneip; Norbert Michael; Thomas Hildebrandt; Neslihan Tavraz; Wolfgang Gärtner; Jon Hughes; Thomas Friedrich; Patrick Scheerer; Maria Andrea Mroginski; Peter Hildebrandt
Journal:  J Phys Chem B       Date:  2020-05-08       Impact factor: 2.991

Review 9.  Molecular mechanisms underlying phytochrome-controlled morphogenesis in plants.

Authors:  Martina Legris; Yetkin Çaka Ince; Christian Fankhauser
Journal:  Nat Commun       Date:  2019-11-19       Impact factor: 14.919

10.  Near-Infrared Markers based on Bacterial Phytochromes with Phycocyanobilin as a Chromophore.

Authors:  Olesya V Stepanenko; Olga V Stepanenko; Olesya G Shpironok; Alexander V Fonin; Irina M Kuznetsova; Konstantin K Turoverov
Journal:  Int J Mol Sci       Date:  2019-12-02       Impact factor: 5.923

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