| Literature DB >> 33996517 |
Varsha D Badal1,2, Colin A Depp1,2,3, Peter F Hitchcock4, David L Penn5,6, Philip D Harvey7,8, Amy E Pinkham9,10.
Abstract
People with schizophrenia (SZ) process emotions less accurately than do healthy comparators (HC), and emotion recognition have expanded beyond accuracy to performance variables like reaction time (RT) and confidence. These domains are typically evaluated independently, but complex inter-relationships can be evaluated through machine learning at an item-by-item level. Using a mix of ranking and machine learning tools, we investigated item-by-item discrimination of facial affect with two emotion recognition tests (BLERT and ER-40) between SZ and HC. The best performing multi-domain model for ER40 had a large effect size in differentiating SZ and HC (d = 1.24) compared to a standard comparison of accuracy alone (d = 0.48); smaller increments in effect sizes were evident for the BLERT (d = 0.87 vs. d = 0.58). Almost half of the selected items were confidence ratings. Within SZ, machine learning models with ER40 (generally accuracy and reaction time) items predicted severity of depression and overconfidence in social cognitive ability, but not psychotic symptoms. Pending independent replication, the results support machine learning, and the inclusion of confidence ratings, in characterizing the social cognitive deficits in SZ. This moderate-sized study (n = 372) included subjects with schizophrenia (SZ, n = 218) and healthy controls (HC, n = 154).Entities:
Keywords: Machine learning; Neural networks; Psychosis; Social cognition
Year: 2021 PMID: 33996517 PMCID: PMC8093458 DOI: 10.1016/j.scog.2021.100196
Source DB: PubMed Journal: Schizophr Res Cogn ISSN: 2215-0013
Performance of ML on ER40 and BLERT datasets compared to performance inferred from t-tests in SCOPE study. (Classification target: SZ vs. HC). For ER401, 120 features (cognition: 40 RT, 40 Corr and meta-cognition: 40 CR) were considered while for BLERT 63 features (cognition: 21 RT, 21 Corr and meta-cognition: 21 CR) were considered as input.
| Dataset | Features | Ranked feature/total | Count of selected negative emotion features | Count of (CR) features | Count of negative CR features | Best performing model | AUC | F1 | Equivalent Cohen's d |
|---|---|---|---|---|---|---|---|---|---|
| ER40 | GINI filtered | 25/120 | 20 | 12 | 11 | Stack | 0.81 | 0.78 | 1.24 |
| – | – | – | – | – | 0.63! | – | 0.48 | ||
| t-Test | – | – | – | – | – | 0.59! | – | 0.32 | |
| – | – | – | – | – | 0.52! | – | 0.08 | ||
| BLERT | GINI filtered | 33/63 | 26 | 16 | 13 | Neural Network, ReLu | 0.73 | 0.71 | 0.87 |
| t-test | – | – | – | – | – | 0.66! | – | 0.58 | |
| t-test | – | – | – | – | – | 0.54! | – | 0.16 | |
| t-Test | – | – | – | – | – | 0.59! | – | 0.32 |
Stack method implies stacking of methods (Naïve Bayes, Neural Network (ReLU), Random Forest, Tree).
Negative features considered for ER40 are S, A and F while negative features considered for BLERT are S, A, F, D and SU.
Positive features considered for ER40 and BLERT are N, H.
Table 8 from (Pinkham et al., 2018a).
Table 2 from (Salgado, 2018).
Performance of ML with OSCAR, SLOF as targets for SZ group. Gini was used to rank top features. Input variables considered were 120 ER40(cognitive: 40 RT, 40 corr and meta-cognitive: 40 CR). Target variable considered were categorical (0,1) while all others were numeric. Here threshold refers to the value of target used for categorization. Performance is shown for the best ranked features and model.
| Target | Threshold | Method | Number of ranked features | Count of (CR) | Count of negative features | Count of negative (CR) | F1 | AUC | Equivalent Cohen's d |
|---|---|---|---|---|---|---|---|---|---|
| Oscars Self Report | 0–17 as 0, 18 and above as 1 | Stochastic Gradient Descent (SGD) | 80 | 34 | 49 | 22 | 0.74 | 0.74 | 0.91 |
| Oscars Informant Report | 0–17 as 0, 18 and above as 1 | AdaBoost | 40 | 27 | 29 | 18 | 0.81 | 0.73 | 0.87 |
Negative features considered for ER40 are S, A and F.
Positive features considered for ER40 are N, H.
Table 2 from (Salgado, 2018).
Performance of ML with targets PANSS, BDI on the ER40 (only SZ group was considered). Gini was used to rank top features. Input variables considered were 120 (cognitive: 40 RT, 40 corr and meta-cognitive: 40 CR). Target variable considered were categorical (0, 1) while all others were numeric. Here threshold refers to the value of target used for categorization. Thresholds for categorization for BDI was taken from (Chemerinski et al., 2008) while for PANSS_pos and PANSS_neg was based on the number closer to the mean of the respective distributions. Performance is shown for the best ranked features and model.
| Target | Threshold | Method | Number of ranked features | Count of (CR) | Count of negative features | Count of negative CR | F1 | AUC | Equivalent Cohen's d |
|---|---|---|---|---|---|---|---|---|---|
| PANSS1_neg | 15 | Neural Network (ReLu) | 35 | 6 | 19 | 3 | 0.65 | 0.57 | 0.25 |
| PANSS1_pos | 15 | Tree | 24 | 10 | 13 | 6 | 0.69 | 0.69 | 0.70 |
| PANSS Reduced Emotional Experience | See below | Stack | 50 | 17 | 33 | 13 | 0.86 | 0.78 | 0.81 |
| BDI | 9 | Neural Network (tanh) | 25 | 6 | 16 | 4 | 0.72 | 0.69 | 0.70 |
| BDI | 15 | SVM (linear) | 25 | 7 | 15 | 5 | 0.81 | 0.77 | 1.04 |
| BDI | 19 | Random Forest | 20 | 6 | 13 | 3 | 0.78 | 0.83 | 1.35 |
| BDI | 29 | Neural Network (ReLu) | 20 | 5 | 9 | 2 | 0.91 | 0.90 | 1.81 |
Negative features considered for ER40 are S, A and F.
Positive features considered for ER40 are N, H.
Table 2 from (Salgado, 2018).
The items in the PANSS Reduced Emotional Experience factor are: Emotional Withdrawal (N2), Passive-apathetic Social Withdrawal (N4) and Active social avoidance (G16).
1 if any factor is >4 else 0.
Comprising Naïve Bayes, Neural Network (ReLu), Random Forest, Tree.
Effect sizes: Cohen's d, T-value and p-value over 5 emotions, and Combined for ER40: A) RT B) CR and C) Correct (Corr) across the groups (HC & SZ).
| Emotion | T value | AUC | Cohen's d | |
|---|---|---|---|---|
| A) Effect size for RT | ||||
| Combined | −2.99 | 0.003 | 0.59 | 0.32 |
| Neutral | 2.38 | 0.017 | 0.52 | 0.09 |
| Sad | 4.69 | <0.001 | 0.54 | 0.17 |
| Happy | 5.74 | <0.001 | 0.55 | 0.20 |
| Angry | 2.33 | 0.019 | 0.52 | 0.09 |
| Fearful | 4.65 | <0.001 | 0.54 | 0.17 |
| B) Effect size for CR | ||||
| Combined | 0.776 | 0.44 | 0.52 | 0.08 |
| Neutral | 0.60 | 0.54 | 0.50 | 0.02 |
| Sad | 3.95 | <0.001 | 0.54 | 0.14 |
| Happy | 4.29 | <0.001 | 0.54 | 0.15 |
| Angry | 1.01 | 0.31 | 0.51 | 0.04 |
| Fearful | 1.62 | 0.11 | 0.51 | 0.06 |
| C) Effect size for Accuracy | ||||
| Combined | 4.69 | <0.001 | 0.63 | 0.48 |
| Neutral | 2.15 | 0.031 | 0.52 | 0.08 |
| Sad | 4.78 | <0.001 | 0.54 | 0.17 |
| Happy | 4.50 | <0.001 | 0.54 | 0.16 |
| Angry | 2.01 | 0.045 | 0.52 | 0.07 |
| Fearful | 5.57 | <0.001 | 0.55 | 0.20 |
n1 = total number of HC participants (i.e. 154) ∗ number of times of each emotion (i.e. 8 of each emotion out of 40) = 1232 and n2 = total number of SZ participants (i.e. 218) ∗ number of times of each emotion (i.e. 8 of each emotion out of 40) = 1744+. n1, n2 is used to calculate degree of freedom for t-test. Approximate associated AUC is also shown (Salgado, 2018). + One response for neutral emotion for SZ was not available.
Table 8 from (Pinkham et al., 2018a).
Effect sizes: Cohen's d, T-value and p-value over 7 emotions, and Combined for BLERT: A) RT B) CR and C) Correct (Corr) across the groups (HC & SZ).
| Emotion | T value | p value | AUC | Cohen's d |
|---|---|---|---|---|
| A) Effect size for RT | ||||
| Combined | −1.54 | 0.124 | 0.54 | 0.16 |
| Neutral | 2.65 | 0.008 | 0.54 | 0.15 |
| Sad | 1.89 | 0.058 | 0.53 | 0.11 |
| Happy | 1.25 | 0.209 | 0.52 | 0.07 |
| Angry | 2.71 | 0.006 | 0.54 | 0.16 |
| Fearful | 1.37 | 0.168 | 0.52 | 0.08 |
| Surprise | 2.01 | 0.044 | 0.53 | 0.12 |
| Disgust | 2.40 | 0.016 | 0.54 | 0.14 |
| B) Effect size for CR | ||||
| Combined | 3.20 | 0.001 | 0.59 | 0.32 |
| Neutral | 4.02 | <0.001 | 0.56 | 0.23 |
| Sad | 4.54 | <0.001 | 0.57 | 0.26 |
| Happy | 3.89 | <0.001 | 0.56 | 0.23 |
| Angry | 4.20 | <0.001 | 0.56 | 0.24 |
| Fearful | 3.17 | 0.002 | 0.55 | 0.19 |
| Surprise | 3.52 | <0.001 | 0.55 | 0.20 |
| Disgust | 4.12 | <0.001 | 0.56 | 0.24 |
| C) Effect size for Accuracy | ||||
| Combined | 5.70 | <0.001 | 0.66 | 0.58 |
| Neutral | 6.85 | <0.001 | 0.61 | 0.40 |
| Sad | 5.72 | <0.001 | 0.59 | 0.34 |
| Happy | 2.27 | 0.02 | 0.54 | 0.14 |
| Angry | 2.59 | 0.009 | 0.54 | 0.16 |
| Fearful | 3.28 | 0.001 | 0.55 | 0.20 |
| Surprise | 3.40 | <0.001 | 0.55 | 0.20 |
| Disgust | 1.57 | 0.116 | 0.52 | 0.10 |
n1 = total number of HC participants (i.e. 154) ∗ number of times of each emotion (i.e. 3 of each emotion out of 21) = 462+ and n2 = total number of SZ participants (i.e. 218) ∗ number of times of each emotion (i.e. 3 of each emotion out of 21) = 654+. n1, n2 is used to calculate degree of freedom for t-test. Approximate associated AUC is also shown (Salgado, 2018). +One response for disgust emotion in SZ and one response for neutral in HC was not available.
Table 8 from (Pinkham et al., 2018a).