Literature DB >> 33972532

MyD88 TIR domain higher-order assembly interactions revealed by microcrystal electron diffraction and serial femtosecond crystallography.

Max T B Clabbers1,2, Susannah Holmes3, Timothy W Muusse4, Parimala R Vajjhala4, Sara J Thygesen4, Alpeshkumar K Malde5, Dominic J B Hunter4,6,7, Tristan I Croll8, Leonie Flueckiger3, Jeffrey D Nanson4, Md Habibur Rahaman4, Andrew Aquila9, Mark S Hunter9, Mengning Liang9, Chun Hong Yoon9, Jingjing Zhao1, Nadia A Zatsepin3, Brian Abbey3, Emma Sierecki6, Yann Gambin6, Katryn J Stacey4,7,10, Connie Darmanin11, Bostjan Kobe12,13,14, Hongyi Xu15, Thomas Ve16.   

Abstract

MyD88 and MAL are Toll-like receptor (TLR) adaptors that signal to induce pro-inflammatory cytokine production. We previously observed that the TIR domain of MAL (MALTIR) forms filaments in vitro and induces formation of crystalline higher-order assemblies of the MyD88 TIR domain (MyD88TIR). These crystals are too small for conventional X-ray crystallography, but are ideally suited to structure determination by microcrystal electron diffraction (MicroED) and serial femtosecond crystallography (SFX). Here, we present MicroED and SFX structures of the MyD88TIR assembly, which reveal a two-stranded higher-order assembly arrangement of TIR domains analogous to that seen previously for MALTIR. We demonstrate via mutagenesis that the MyD88TIR assembly interfaces are critical for TLR4 signaling in vivo, and we show that MAL promotes unidirectional assembly of MyD88TIR. Collectively, our studies provide structural and mechanistic insight into TLR signal transduction and allow a direct comparison of the MicroED and SFX techniques.

Entities:  

Year:  2021        PMID: 33972532     DOI: 10.1038/s41467-021-22590-6

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  92 in total

Review 1.  Death, TIR, and RHIM: Self-assembling domains involved in innate immunity and cell-death signaling.

Authors:  Jeffrey D Nanson; Bostjan Kobe; Thomas Ve
Journal:  J Leukoc Biol       Date:  2018-12-05       Impact factor: 4.962

Review 2.  The molecular mechanisms of signaling by cooperative assembly formation in innate immunity pathways.

Authors:  Parimala R Vajjhala; Thomas Ve; Adam Bentham; Katryn J Stacey; Bostjan Kobe
Journal:  Mol Immunol       Date:  2017-02-27       Impact factor: 4.407

3.  Structural basis of TIR-domain-assembly formation in MAL- and MyD88-dependent TLR4 signaling.

Authors:  Thomas Ve; Parimala R Vajjhala; Andrew Hedger; Tristan Croll; Frank DiMaio; Shane Horsefield; Xiong Yu; Peter Lavrencic; Zahid Hassan; Garry P Morgan; Ashley Mansell; Mehdi Mobli; Ailis O'Carroll; Brieuc Chauvin; Yann Gambin; Emma Sierecki; Michael J Landsberg; Katryn J Stacey; Edward H Egelman; Bostjan Kobe
Journal:  Nat Struct Mol Biol       Date:  2017-07-31       Impact factor: 15.369

Review 4.  The cryo-EM method microcrystal electron diffraction (MicroED).

Authors:  Brent L Nannenga; Tamir Gonen
Journal:  Nat Methods       Date:  2019-04-29       Impact factor: 28.547

5.  Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signalling.

Authors:  Su-Chang Lin; Yu-Chih Lo; Hao Wu
Journal:  Nature       Date:  2010-05-19       Impact factor: 49.962

Review 6.  Adaptors in toll-like receptor signaling and their potential as therapeutic targets.

Authors:  Thomas Ve; Nicholas J Gay; Ashley Mansell; Bostjan Kobe; Stuart Kellie
Journal:  Curr Drug Targets       Date:  2012-10       Impact factor: 3.465

7.  A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals.

Authors:  Igor Nederlof; Eric van Genderen; Yao Wang Li; Jan Pieter Abrahams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-15

8.  Three-dimensional electron crystallography of protein microcrystals.

Authors:  Dan Shi; Brent L Nannenga; Matthew G Iadanza; Tamir Gonen
Journal:  Elife       Date:  2013-11-19       Impact factor: 8.140

9.  MyD88 Death-Domain Oligomerization Determines Myddosome Architecture: Implications for Toll-like Receptor Signaling.

Authors:  Martin C Moncrieffe; Daniel Bollschweiler; Bing Li; Pawel A Penczek; Lee Hopkins; Clare E Bryant; David Klenerman; Nicholas J Gay
Journal:  Structure       Date:  2020-01-28       Impact factor: 5.006

10.  High-resolution structure determination by continuous-rotation data collection in MicroED.

Authors:  Brent L Nannenga; Dan Shi; Andrew G W Leslie; Tamir Gonen
Journal:  Nat Methods       Date:  2014-08-03       Impact factor: 28.547

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  14 in total

Review 1.  Electron Diffraction of 3D Molecular Crystals.

Authors:  Ambarneil Saha; Shervin S Nia; José A Rodríguez
Journal:  Chem Rev       Date:  2022-08-15       Impact factor: 72.087

2.  Structural basis of the IL-1 receptor TIR domain-mediated IL-1 signaling.

Authors:  Jianjie Zhou; Yu Xiao; Yifei Ren; Jiwan Ge; Xinquan Wang
Journal:  iScience       Date:  2022-06-02

Review 3.  Life-or-death decisions in plant immunity.

Authors:  Xing Zhang; Xinnian Dong
Journal:  Curr Opin Immunol       Date:  2022-02-12       Impact factor: 7.268

Review 4.  Molecular innovations in plant TIR-based immunity signaling.

Authors:  Dmitry Lapin; Oliver Johanndrees; Zhongshou Wu; Xin Li; Jane E Parker
Journal:  Plant Cell       Date:  2022-04-26       Impact factor: 12.085

5.  Structural basis of SARM1 activation, substrate recognition, and inhibition by small molecules.

Authors:  Yun Shi; Philip S Kerry; Jeffrey D Nanson; Todd Bosanac; Yo Sasaki; Raul Krauss; Forhad K Saikot; Sarah E Adams; Tamim Mosaiab; Veronika Masic; Xianrong Mao; Faith Rose; Eduardo Vasquez; Marieke Furrer; Katie Cunnea; Andrew Brearley; Weixi Gu; Zhenyao Luo; Lou Brillault; Michael J Landsberg; Aaron DiAntonio; Bostjan Kobe; Jeffrey Milbrandt; Robert O Hughes; Thomas Ve
Journal:  Mol Cell       Date:  2022-03-24       Impact factor: 19.328

6.  Discovery of a Novel MyD88 Inhibitor M20 and Its Protection Against Sepsis-Mediated Acute Lung Injury.

Authors:  Jiali Song; Daoxing Chen; Yingqiao Pan; Xueqin Shi; Qian Liu; Xiaoyao Lu; Ximing Xu; Gaozhi Chen; Yuepiao Cai
Journal:  Front Pharmacol       Date:  2021-11-29       Impact factor: 5.810

7.  Heterologous Expression and Assembly of Human TLR Signaling Components in Saccharomyces cerevisiae.

Authors:  Julia María Coronas-Serna; Elba Del Val; Jonathan C Kagan; María Molina; Víctor J Cid
Journal:  Biomolecules       Date:  2021-11-22

Review 8.  Structural Evolution of TIR-Domain Signalosomes.

Authors:  Surekha Nimma; Weixi Gu; Natsumi Maruta; Yan Li; Mengqi Pan; Forhad Karim Saikot; Bryan Y J Lim; Helen Ying McGuinness; Zannati Ferdous Zaoti; Sulin Li; Sneha Desa; Mohammad Kawsar Manik; Jeffrey D Nanson; Bostjan Kobe
Journal:  Front Immunol       Date:  2021-11-17       Impact factor: 7.561

Review 9.  MicroED: conception, practice and future opportunities.

Authors:  Max T B Clabbers; Anna Shiriaeva; Tamir Gonen
Journal:  IUCrJ       Date:  2022-01-18       Impact factor: 4.769

10.  Benchmarking the ideal sample thickness in cryo-EM.

Authors:  Michael W Martynowycz; Max T B Clabbers; Johan Unge; Johan Hattne; Tamir Gonen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-07       Impact factor: 11.205

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