Literature DB >> 35334231

Structural basis of SARM1 activation, substrate recognition, and inhibition by small molecules.

Yun Shi1, Philip S Kerry2, Jeffrey D Nanson3, Todd Bosanac4, Yo Sasaki5, Raul Krauss4, Forhad K Saikot3, Sarah E Adams2, Tamim Mosaiab1, Veronika Masic1, Xianrong Mao5, Faith Rose1, Eduardo Vasquez1, Marieke Furrer6, Katie Cunnea2, Andrew Brearley2, Weixi Gu3, Zhenyao Luo3, Lou Brillault7, Michael J Landsberg3, Aaron DiAntonio8, Bostjan Kobe3, Jeffrey Milbrandt5, Robert O Hughes9, Thomas Ve10.   

Abstract

The NADase SARM1 (sterile alpha and TIR motif containing 1) is a key executioner of axon degeneration and a therapeutic target for several neurodegenerative conditions. We show that a potent SARM1 inhibitor undergoes base exchange with the nicotinamide moiety of nicotinamide adenine dinucleotide (NAD+) to produce the bona fide inhibitor 1AD. We report structures of SARM1 in complex with 1AD, NAD+ mimetics and the allosteric activator nicotinamide mononucleotide (NMN). NMN binding triggers reorientation of the armadillo repeat (ARM) domains, which disrupts ARM:TIR interactions and leads to formation of a two-stranded TIR domain assembly. The active site spans two molecules in these assemblies, explaining the requirement of TIR domain self-association for NADase activity and axon degeneration. Our results reveal the mechanisms of SARM1 activation and substrate binding, providing rational avenues for the design of new therapeutics targeting SARM1.
Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  ARM domain; NADase; TIR domain; X-ray crystallography; allosteric activator; base exchange; cryo-EM; orthosteric inhibitor

Mesh:

Substances:

Year:  2022        PMID: 35334231      PMCID: PMC9188649          DOI: 10.1016/j.molcel.2022.03.007

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   19.328


  77 in total

1.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

2.  Inference of macromolecular assemblies from crystalline state.

Authors:  Evgeny Krissinel; Kim Henrick
Journal:  J Mol Biol       Date:  2007-05-13       Impact factor: 5.469

3.  The SARM1 Toll/Interleukin-1 Receptor Domain Possesses Intrinsic NAD+ Cleavage Activity that Promotes Pathological Axonal Degeneration.

Authors:  Kow Essuman; Daniel W Summers; Yo Sasaki; Xianrong Mao; Aaron DiAntonio; Jeffrey Milbrandt
Journal:  Neuron       Date:  2017-03-22       Impact factor: 17.173

4.  MolProbity: More and better reference data for improved all-atom structure validation.

Authors:  Christopher J Williams; Jeffrey J Headd; Nigel W Moriarty; Michael G Prisant; Lizbeth L Videau; Lindsay N Deis; Vishal Verma; Daniel A Keedy; Bradley J Hintze; Vincent B Chen; Swati Jain; Steven M Lewis; W Bryan Arendall; Jack Snoeyink; Paul D Adams; Simon C Lovell; Jane S Richardson; David C Richardson
Journal:  Protein Sci       Date:  2017-11-27       Impact factor: 6.725

5.  Nepsilon-thioacetyl-lysine: a multi-facet functional probe for enzymatic protein lysine Nepsilon-deacetylation.

Authors:  David G Fatkins; Andrew D Monnot; Weiping Zheng
Journal:  Bioorg Med Chem Lett       Date:  2006-05-12       Impact factor: 2.823

6.  TIR domains of plant immune receptors are NAD+-cleaving enzymes that promote cell death.

Authors:  Li Wan; Kow Essuman; Ryan G Anderson; Yo Sasaki; Freddy Monteiro; Eui-Hwan Chung; Erin Osborne Nishimura; Aaron DiAntonio; Jeffrey Milbrandt; Jeffery L Dangl; Marc T Nishimura
Journal:  Science       Date:  2019-08-23       Impact factor: 47.728

7.  The base exchange reaction of NAD+ glycohydrolase: identification of novel heterocyclic alternative substrates.

Authors:  Frank Preugschat; Ginger H Tomberlin; David J T Porter
Journal:  Arch Biochem Biophys       Date:  2008-09-22       Impact factor: 4.013

8.  Sarm1-mediated axon degeneration requires both SAM and TIR interactions.

Authors:  Josiah Gerdts; Daniel W Summers; Yo Sasaki; Aaron DiAntonio; Jeffrey Milbrandt
Journal:  J Neurosci       Date:  2013-08-14       Impact factor: 6.167

9.  dSarm/Sarm1 is required for activation of an injury-induced axon death pathway.

Authors:  Jeannette M Osterloh; Jing Yang; Timothy M Rooney; A Nicole Fox; Robert Adalbert; Eric H Powell; Amy E Sheehan; Michelle A Avery; Rachel Hackett; Mary A Logan; Jennifer M MacDonald; Jennifer S Ziegenfuss; Stefan Milde; Ying-Ju Hou; Carl Nathan; Aihao Ding; Robert H Brown; Laura Conforti; Michael Coleman; Marc Tessier-Lavigne; Stephan Züchner; Marc R Freeman
Journal:  Science       Date:  2012-06-07       Impact factor: 47.728

10.  A rise in NAD precursor nicotinamide mononucleotide (NMN) after injury promotes axon degeneration.

Authors:  M Di Stefano; I Nascimento-Ferreira; G Orsomando; V Mori; J Gilley; R Brown; L Janeckova; M E Vargas; L A Worrell; A Loreto; J Tickle; J Patrick; J R M Webster; M Marangoni; F M Carpi; S Pucciarelli; F Rossi; W Meng; A Sagasti; R R Ribchester; G Magni; M P Coleman; L Conforti
Journal:  Cell Death Differ       Date:  2014-10-17       Impact factor: 15.828

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  2 in total

1.  Cyclic nucleotide-induced helical structure activates a TIR immune effector.

Authors:  Gaëlle Hogrel; Abbie Guild; Shirley Graham; Hannah Rickman; Sabine Grüschow; Quentin Bertrand; Laura Spagnolo; Malcolm F White
Journal:  Nature       Date:  2022-08-10       Impact factor: 69.504

2.  Selective inhibitors of SARM1 targeting an allosteric cysteine in the autoregulatory ARM domain.

Authors:  Hannah C Feldman; Elisa Merlini; Carlos Guijas; Kristen E DeMeester; Evert Njomen; Ellen M Kozina; Minoru Yokoyama; Ekaterina Vinogradova; Holly T Reardon; Bruno Melillo; Stuart L Schreiber; Andrea Loreto; Jacqueline L Blankman; Benjamin F Cravatt
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-22       Impact factor: 12.779

  2 in total

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