| Literature DB >> 33970390 |
Xuecheng Yin1, I E Büyüktahtakın2.
Abstract
Existing compartmental models in epidemiology are limited in terms of optimizing the resource allocation to control an epidemic outbreak under disease growth uncertainty. In this study, we address this core limitation by presenting a multi-stage stochastic programming compartmental model, which integrates the uncertain disease progression and resource allocation to control an infectious disease outbreak. The proposed multi-stage stochastic program involves various disease growth scenarios and optimizes the distribution of treatment centers and resources while minimizing the total expected number of new infections and funerals. We define two new equity metrics, namely infection and capacity equity, and explicitly consider equity for allocating treatment funds and facilities over multiple time stages. We also study the multi-stage value of the stochastic solution (VSS), which demonstrates the superiority of the proposed stochastic programming model over its deterministic counterpart. We apply the proposed formulation to control the Ebola Virus Disease (EVD) in Guinea, Sierra Leone, and Liberia of West Africa to determine the optimal and fair resource-allocation strategies. Our model balances the proportion of infections over all regions, even without including the infection equity or prevalence equity constraints. Model results also show that allocating treatment resources proportional to population is sub-optimal, and enforcing such a resource allocation policy might adversely impact the total number of infections and deaths, and thus resulting in a high cost that we have to pay for the fairness. Our multi-stage stochastic epidemic-logistics model is practical and can be adapted to control other infectious diseases in meta-populations and dynamically evolving situations.Entities:
Keywords: COVID-19; Compartmental models; Ebola Virus Disease (EVD); Epidemic diseases; Equity constraints; Infection, capacity and prevalence equity metrics; Multi-stage stochastic mixed-integer programming model; Resource allocation; Uncertainty in disease growth; West Africa
Year: 2021 PMID: 33970390 PMCID: PMC8107811 DOI: 10.1007/s10729-021-09559-z
Source DB: PubMed Journal: Health Care Manag Sci ISSN: 1386-9620
Fig. 1One-Step Disease Compartmental Model
The range (lower and upper bounds), mean, and standard deviation of community transmission rate in each country
| Region | Rate range | Mean | Standard deviation |
|---|---|---|---|
| Guinea | [0.24, 0.84] | 0.54 | 0.10 |
| Sierra Leone | [0.24, 0.88] | 0.66 | 0.07 |
| Liberia | [0.24, 0.64] | 0.44 | 0.07 |
Data is gathered from [48] and [49]
Fig. 2Scenario tree generation example for Guinea, where each circle, denoted by n, , represents a node of the scenario tree
The 0.15-, 0.50-, 0.85-quantiles of the normal distribution of the random variable at nodes 0 and 1 of the scenario tree in Fig. 2
| Low | Medium | High | |
|---|---|---|---|
| node 0: | |||
| node 1: |
Fig. 3Comparison of predicted cases with real outbreak data for cumulative infections in Guinea, Liberia, and Sierra Leone
Statistical analysis to compare bi-weekly predicted cases and real outbreak data
| Country | Mean | Two-tailed paired t-test | ||||
|---|---|---|---|---|---|---|
| Outbreak | Predicted | t-stat | t-critical | p-value | ||
| Guinea | 221.0 | 266.8 | 0.41 | 1.89 | 0.65 | |
| Infections | Sierra Leone | 866.3 | 910.1 | 0.65 | 0.73 | |
| Liberia | 471.1 | 534.5 | 0.45 | 0.67 | ||
V SS values up to 4 stages for the 8-stage problem with EEV values
| 0 | 41 | 65 | 69 |
Budget and bed allocated under different budget levels
| Budget | Country | Region | Stage-1 | Total | Stage-1 | Total |
|---|---|---|---|---|---|---|
| ($M) | Budget | Budget | ETC | ETC | ||
| ($M) | ($M) | (50/100) | (50/100) | |||
| 12 | Guinea | UG | 0.06 | 0.13 | 1/1 | 1/1 |
| MG | 0.01 | 0.02 | 1/0 | 1/0 | ||
| LG | 0.03 | 0.06 | 1/0 | 1/0 | ||
| Sierra Leone | S | 4.33 | 11.67 | 1/4 | 1/4 | |
| Liberia | NL | 0.04 | 0.09 | 1/1 | 1/1 | |
| SL | 0.01 | 0.03 | 1/1 | 1/1 | ||
| Total | ||||||
| 24 | Guinea | UG | 0.72 | 1.83 | 1/1 | 1/1 |
| MG | 0.52 | 1.21 | 1/0 | 1/1 | ||
| LG | 0.62 | 1.53 | 1/1 | 1/1 | ||
| Sierra Leone | S | 5.35 | 15.50 | 1/5 | 1/5 | |
| Liberia | NL | 0.83 | 2.31 | 1/1 | 1/1 | |
| SL | 0.57 | 1.60 | 1/1 | 1/1 | ||
| Total | ||||||
| 48 | Guinea | UG | 1.11 | 2.52 | 1/1 | 1/1 |
| MG | 0.91 | 1.91 | 1/1 | 1/1 | ||
| LG | 1.01 | 2.32 | 1/1 | 1/1 | ||
| Sierra Leone | S | 6.85 | 18.89 | 4/5 | 5/5 | |
| Liberia | NL | 3.94 | 10.42 | 3/3 | 3/3 | |
| SL | 2.40 | 6.03 | 2/2 | 2/2 | ||
| Total |
Fig. 6Total number of infections and funerals under different budget levels
Fig. 4Total budget allocation under different budget levels
Fig. 5Total capacity allocation under different budget levels
Budget and bed allocated under different scenarios
| Scenario | Country | Region | Stage-1 | Total | Total |
|---|---|---|---|---|---|
| ($M) | Budget | Budget | Bed | ||
| ($M) | ($M) | (50/100) | |||
| All Low | Guinea | UG | 0.60 | 1.15 | 2/0 |
| MG | 0.60 | 1.02 | 2/0 | ||
| LG | 0.60 | 1.13 | 2/0 | ||
| Sierra Leone | S | 5.39 | 12.44 | 0/5 | |
| Liberia | NL | 2.15 | 5.46 | 0/2 | |
| SL | 1.08 | 2.79 | 0/2 | ||
| Total | |||||
| All Medium | Guinea | UG | 0.60 | 1.64 | 2/0 |
| MG | 0.60 | 1.43 | 2/0 | ||
| LG | 0.60 | 1.64 | 2/0 | ||
| Sierra Leone | S | 5.39 | 16.13 | 0/5 | |
| Liberia | NL | 0 | 0 | 0/0 | |
| SL | 1.08 | 3.16 | 0/2 | ||
| Total | |||||
| All High | Guinea | UG | 1.08 | 2.75 | 0/2 |
| MG | 0.60 | 1.51 | 2/0 | ||
| LG | 1.08 | 2.23 | 0/2 | ||
| Sierra Leone | S | 7.06 | 17.51 | 2/7 | |
| Liberia | NL | 0 | 0 | 0/0 | |
| SL | 0 | 0 | 0/0 | ||
| Total | |||||
| Low-High | Guinea | UG | 0.60 | 1.44 | 2/0 |
| MG | 0.60 | 1.18 | 2/0 | ||
| LG | 0.60 | 1.34 | 2/0 | ||
| Sierra Leone | S | 4.31 | 12.02 | 0/5 | |
| Liberia | NL | 1.68 | 4.91 | 2/2 | |
| SL | 1.08 | 3.11 | 0/2 | ||
| Total | |||||
| High-Low | Guinea | UG | 1.08 | 2.44 | 0/2 |
| MG | 0.60 | 1.29 | 2/0 | ||
| LG | 1.08 | 2.23 | 0/2 | ||
| Sierra Leone | S | 6.46 | 15.47 | 0/7 | |
| Liberia | NL | 1.08 | 2.56 | 0/2 | |
| SL | 0 | 0 | 0/0 | ||
| Total |
Fig. 7Total budget allocation under different scenarios
Fig. 8Total capacity allocation under different scenarios
Fig. 9Total number of new infections and funerals under different scenarios
Model run specifics with the capacity equity constraint (1t)
| Solution Time | Optimality | |
|---|---|---|
| (CPU sec) | Gap (%) | |
| 0.05 | 72,103 | 7 |
| 0.1 | 72,121 | 8 |
| 0.2 | 72,053 | 6 |
| 0.4 | 72,031 | 2 |
| A large | 7,232 | 0 |
| (no-equity-constraint case) |
Fig. 10Optimal budget allocation under different k values for an 8-stage problem with $24M budget
Fig. 11Total number of new infections and funerals under different k values for an 8-stage problem with $24M budget
Sets and indices
| Notation | Description |
|---|---|
| Set of time periods, | |
| Set of ETC types, | |
| Set of regions, | |
| Set of all surrounding regions of region | |
| Ω | Set of scenarios, |
| Index for time period where | |
| Index for region where | |
| Index defining type of ETC, where | |
| Index for scenario where |
Transition parameters describing the rate of movement between disease compartments
| Notation | Description |
|---|---|
| Disease fatality rate without treatment in region | |
| Disease fatality rate while receiving treatment in region | |
| Disease survival rate without treatment in region | |
| Disease survival rate with treatment in region | |
| Safe burial rate of Ebola-related dead bodies in region | |
| Transmission rate per person due to community | |
| interaction in region | |
| Transition rate per person during traditional funeral | |
| ceremony in region |
Other parameters
| Notation | Description |
|---|---|
| Unit cost of treatment for an infected individual in | |
| region | |
| Fixed cost of establishing type | |
| end of period | |
| Capacity (number of beds) of type | |
| The population in region | |
| Δ | Total available budget for treatment. |
| Initial number of susceptible individuals in region | |
| Initial number of infected individuals in region | |
| Initial number of treated individuals in region | |
| Initial number of recovered individuals in region | |
| Initial number of unburied dead bodies (funerals) | |
| in region | |
| Initial number of buried dead bodies (safe burials) | |
| in region | |
| Initial treatment capacity in terms of number of ETC | |
| beds in region | |
| Migration rate of susceptible individuals from | |
| surrounding regions | |
| Migration rate of infected individuals from surrounding | |
| regions | |
| Migration rate of susceptible individuals from region | |
| to surrounding regions | |
| Migration rate of infected individuals from region | |
| surrounding regions |
State variables
| Notation | Description |
|---|---|
| Number of susceptible individuals in region | |
| of period | |
| Number of infected individuals in region | |
| period | |
| Number of individuals receiving treatment in region | |
| Number of recovered individuals in region | |
| of period j under scenario | |
| Number of deceased individuals due to the epidemic | |
| in region | |
| Number of buried individuals in region | |
| period | |
| Number of susceptible individuals migrating into | |
| region | |
| Number of susceptible individuals emigrating from | |
| region | |
| Number of infected individuals migrating into region | |
| Number of infected individuals emigrating from | |
| region |
Decision variables
| Notation | Description |
|---|---|
| Total capacity (number of beds) of established ETCs | |
| in region | |
| Number of infected individuals hospitalized (and | |
| quarantined) in region | |
| scenario | |
| Number of type | |
| end of period |
Regions, population size and rate in West Africa
| Guinea | Population | Ratio | Liberia | Population | Ratio | Sierra | Population | Ratio |
|---|---|---|---|---|---|---|---|---|
| (millions) | (millions) | Leone | (millions) | |||||
| UG | 4,3 | 0.41 | NL | 2,2 | 0.64 | S | 4,9 | 1.00 |
| MG | 2,7 | 0.25 | SL | 1,2 | 0.36 | |||
| LG | 3,7 | 0.34 | ||||||
| Total | 1.00 | 1.00 | 1.00 |
The number of infected people at the beginning of the planning horizon (August 30, 2014) in West Africa
| Guinea | Sierra Leone | Liberia |
|---|---|---|
| 218 | 604 | 685 |
Bi-weekly migration rate between regions of Guinea and Liberia, original data acquired from [83]
| From ∖ To | UG | MG | LG | NL | SL |
|---|---|---|---|---|---|
| UG | 0.0032 | 0.0010 | |||
| MG | 0.0052 | 0.0025 | |||
| LG | 0.0012 | 0.0018 | |||
| NL | 0.0007 | ||||
| SL | 0.0011 |
Summary of Ebola treatment cost for 50 (100)-bed ETC
| Cost description | Fixed cost | Variable cost∗ | Safe burial cost∗ | |
|---|---|---|---|---|
| Ebola treatment center | $386,000 ($694,800) | $8,810 | ||
| Isolation unit center (IUC) | $112,500 | $1,133 | ||
| Laboratory diagnosis | $100,000 | $540 | ||
| Subnational technical services | $2,250 | |||
| Contact tracing | $1,128 | |||
| Safe burial | $1,127 | |||
| Total |
* Variable and safe burial costs are bi-weekly
Transmission parameters and bi-weekly rates for the Ebola outbreak
| Parameter | Description | Data | Reference | ||
|---|---|---|---|---|---|
| Guinea | Sierra Leone | Liberia | |||
| Rate of fatality without treatment | 0.428 | 0.124 | 0.176 | [ | |
| Rate of fatality with treatment | 0.350 | 0.096 | 0.128 | [ | |
| Rate of recovery without treatment | 0.240 | 0.242 | 0.232 | [ | |
| Rate of recovery with treatment | 0.416 | 0.327 | 0.312 | [ | |
| Safe burial rate | 0.730 | 0.710 | 0.740 | [ | |
| Transmission rate in community (Low) | 0.660 | 0.632 | 0.560 | [ | |
| Transmission rate in community (High) | 0.990 | 0.940 | 0.840 | [ | |
| Transmission rate at traditional funeral | 1.460 | 1.420 | 1.480 | [ |
Model run specifics with the infection equity constraint (1s)
| Solution Time (CPU sec) | Optimality Gap (%) | |
|---|---|---|
| 0.2 | 36,068 | 29 |
| 0.3 | 7,213 | 1 |
| 0.4 | 7,214 | 1 |
| A large | 7232 | 0 |
| (no-equity-constraint case) |
Model run specifics with the prevalence equity constraint
| Solution Time (CPU sec) | Optimality Gap (%) | |
|---|---|---|
| 3 × 10− 9 | 36,041 | 1 |
| 5 × 10− 9 | 7,204 | 1 |
| 1 × 10− 8 | 7,232 | 1 |
| 2 × 10− 8 | 7,231 | 1 |
| A large | 7,232 | 0 |
| (no-equity-constraint case) |