| Literature DB >> 34866765 |
Xuecheng Yin1, I Esra Büyüktahtakın2, Bhumi P Patel2.
Abstract
This study presents a new risk-averse multi-stage stochastic epidemics-ventilator-logistics compartmental model to address the resource allocation challenges of mitigating COVID-19. This epidemiological logistics model involves the uncertainty of untested asymptomatic infections and incorporates short-term human migration. Disease transmission is also forecasted through a new formulation of transmission rates that evolve over space and time with respect to various non-pharmaceutical interventions, such as wearing masks, social distancing, and lockdown. The proposed multi-stage stochastic model overviews different scenarios on the number of asymptomatic individuals while optimizing the distribution of resources, such as ventilators, to minimize the total expected number of newly infected and deceased people. The Conditional Value at Risk (CVaR) is also incorporated into the multi-stage mean-risk model to allow for a trade-off between the weighted expected loss due to the outbreak and the expected risks associated with experiencing disastrous pandemic scenarios. We apply our multi-stage mean-risk epidemics-ventilator-logistics model to the case of controlling COVID-19 in highly-impacted counties of New York and New Jersey. We calibrate, validate, and test our model using actual infection, population, and migration data. We also define a new region-based sub-problem and bounds on the problem and then show their computational benefits in terms of the optimality and relaxation gaps. The computational results indicate that short-term migration influences the transmission of the disease significantly. The optimal number of ventilators allocated to each region depends on various factors, including the number of initial infections, disease transmission rates, initial ICU capacity, the population of a geographical location, and the availability of ventilator supply. Our data-driven modeling framework can be adapted to study the disease transmission dynamics and logistics of other similar epidemics and pandemics.Entities:
Keywords: COVID-19; Mean-CVaR multi-stage stochastic mixed-integer programming model; OR in health services; Pandemic resource and ventilator allocation; Risk-averse optimization
Year: 2021 PMID: 34866765 PMCID: PMC8632406 DOI: 10.1016/j.ejor.2021.11.052
Source DB: PubMed Journal: Eur J Oper Res ISSN: 0377-2217 Impact factor: 6.363
Summary of the Literature Review.
| Approach | Specific Method | Reference | Modeling or Logistical Feature | Outbreak |
|---|---|---|---|---|
| Compartmental, Simulation and Forecasting Models | Compartmental and Simulation | Estimate the impact of nonpharmacological interventions | COVID-19 | |
| Determine forces of infections and | COVID-19 | |||
| Estimate the effects of under-detection of confirmed cases | COVID-19 | |||
| Estimate the impacts of required social distancing measures | COVID-19 | |||
| Estimate surges in clinical demand | COVID-19 | |||
| Stochastic Compartmental | Assess the COVID-19 cases for lockdowns in India | COVID-19 | ||
| Estimate the transmission rate of COVID-19 infections | COVID-19 | |||
| Estimate | COVID-19 | |||
| Analyze the impacts of ICU bed capacity | COVID-19 | |||
| Calculate the reproduction number | COVID-19 | |||
| Understand the impacts of transportation in epidemics | COVID-19 | |||
| Find the number of infections using the isolation compartment | COVID-19 | |||
| Regression and Time-Series Models | Estimate transmission using mobile data | COVID-19 | ||
| Estimate the number of infections | COVID-19 | |||
| Visualize transmission rate | COVID-19 | |||
| Forecast hospital capacity | COVID-19 | |||
| Forecast ICU occupancy and ventilators | COVID-19 | |||
| Optimization | Two-Stage Stochastic Programming | Minimize the expected non-covered demand | COVID-19 | |
| Optimize the allocation of ventilators | COVID-19 | |||
| Optimize the vaccination policy | General | |||
| Multi-Stage Stochastic Programming | Optimize resources and centers allocation under uncertainty and equity | Ebola | ||
| Optimize vaccine allocation and treatment logistics under a mean-CVaR objective | Ebola | |||
| This paper | Optimize ventilator allocation under asymptomatic uncertainty and risk | COVID-19 | ||
| MIP and/or Machine Learning | Optimize ventilator allocation in the US | COVID-19 | ||
| Integrate reinforcement learning and simulation for epidemic decision-making | COVID-19 | |||
| Integrate compartmental and logistics models to minimize infections | Ebola | |||
| Optimize the allocation of mechanical ventilators | Influenza | |||
| Optimize ventilator and ICU bed allocation in the UK and Spain | COVID-19 | |||
| Integrate agent-based simulation and MIP to optimize vaccine location-allocation | COVID-19 | |||
| Network Optimization | Optimize the distribution of ventilators | COVID-19 | ||
| Robust Optimization | Optimize resource transfer to reduce critical shortages | COVID-19 | ||
| Approximate Dynamic Programming | Optimize resource allocation under a limited intervention budget | HIV | ||
| Stochastic System Dynamics | Vaccinate incorporating the tracing/vaccination queue | Smallpox | ||
| Maximize the number of new infections averted | General | |||
| Review | Systematic Review | Survey the literature on epidemic control logistics | General | |
| Structured Review | Survey literature on the COVID-19 pandemic supply chains | COVID-19 | ||
Fig. 1One-step COVID-19 compartmental model. Note that and are not constant transition rates; and they depend on the available hospital and ICU capacity, respectively.
Transmission rate in New York and New Jersey and impact of interventions.
| County | Transmission Rate | Transmission Rate | Impact of | Impact of | Impact of |
|---|---|---|---|---|---|
| at Stage 1 | at Stage 2 | None | Mask and Social Distancing | Lockdown | |
| New York | 4.5 | 0.9855 | 1 | 0.4 | 0.6 |
| Kings | 9 | 0.9855 | 1 | 0.4 | 0.6 |
| Queens | 10 | 1.095 | 1 | 0.4 | 0.6 |
| Bronx | 12 | 1.314 | 1 | 0.4 | 0.6 |
| Richmond | 12 | 1.314 | 1 | 0.4 | 0.6 |
| Hudson | 22 | 2.409 | 1 | 0.3 | 0.6 |
| Bergen | 11 | 1.408 | 1 | 0.3 | 0.6 |
| Essex | 22 | 2.409 | 1 | 0.3 | 0.6 |
Fig. 2Multi-stage scenario tree generation example for the uncertain proportion of untested asymptomatic infections ().
The 0.15-, 0.50-, 0.85-quantiles of the normal distribution at nodes 0, 1, and 3 of the scenario tree in Fig. 2 and the associated node of the uncertain parameter realization.
| Low (realized node) | Medium (realized node) | High (realized node) | |
|---|---|---|---|
| Node 0 Distribution | 0.21 (node 1) | 0.26 (node 2) | 0.31 (node 3) |
| Node 1 Distribution | 0.17 (node 4) | 0.21 (node 5) | 0.25 (node 6) |
| Node 3 Distribution | 0.12 (node 10) | 0.31 (node 11) | 0.50 (node 12) |
Fig. 3Decision process in a multi-stage stochastic program over stages .
Optimality gap results using lb, ub, and lb+ub for and under different budget levels.
| Budget | Exp | CutTime | Time | MIPgap | GapImp | Igap | Rgap | GapImp | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| (CPU sec) | (CPU sec) | (%) | (%) | (%) | (%) | (%) | ||||||
| R | S | R | S | R | S | R | S | R | R | |||
| $30M | 0 | 7203 | 13.1 | 13.9 | ||||||||
| 797 | 1330 | 8098 | 8536 | 13.1 | 13.3 | 0.1 | 0.0 | 13.2 | 4.9 | |||
| 848 | 1306 | 8068 | 8524 | 8.1 | 7.9 | 38.3 | 39.4 | 13.9 | 0.0 | |||
| 965 | 1331 | 8294 | 8535 | 8.0 | 9.3 | 38.6 | 29.0 | 13.2 | 4.9 | |||
| $35M | 0 | 7203 | 9.3 | 10.3 | ||||||||
| 171 | 1234 | 7476 | 8438 | 9.3 | 13.4 | 0.0 | 0.0 | 9.4 | 9.0 | |||
| 157 | 1314 | 7393 | 8530 | 8.3 | 7.8 | 10.4 | 15.8 | 10.3 | 0.0 | |||
| 178 | 1270 | 7501 | 8481 | 8.3 | 10.1 | 11.0 | 0.0 | 9.4 | 9.0 | |||
| 0 | 7204 | 9.6 | 10.7 | |||||||||
| 434 | 1080 | 7736 | 8282 | 9.5 | 13.3 | 0.4 | 0.0 | 9.5 | 10.7 | |||
| 434 | 1098 | 7654 | 8302 | 8.3 | 7.8 | 13.4 | 19.1 | 10.7 | 0.0 | |||
| 434 | 1088 | 7754 | 8291 | 8.3 | 9.2 | 13.1 | 4.0 | 9.5 | 10.7 | |||
| $45M | 0 | 7203 | 9.3 | 10.4 | ||||||||
| 1381 | 1354 | 8682 | 8358 | 9.3 | 13.4 | 0.1 | 0.0 | 9.2 | 12.1 | |||
| 1252 | 1132 | 8458 | 8334 | 8.1 | 8.0 | 13.0 | 14.4 | 10.4 | 0.0 | |||
| 1335 | 1121 | 8639 | 8324 | 8.2 | 7.7 | 12.2 | 17.8 | 9.2 | 12.1 | |||
| $50M | 1 | 6775 | 0.0 | 1.1 | ||||||||
| 204 | 982 | 7086 | 8188 | 0.0 | 13.4 | 0.0 | 0.0 | 0.0 | 100.0 | |||
| 215 | 969 | 7424 | 8172 | 0.0 | 7.4 | 0.0 | 0.0 | 1.1 | 0.0 | |||
| 220 | 956 | 7524 | 8168 | 0.0 | 7.1 | 0.0 | 0.0 | 0.0 | 100.0 | |||
| 0 | 7118 | 8.3 | 9.3 | |||||||||
| 598 | 1156 | 7816 | 8360 | 8.2 | 13.4 | 0.1 | 0.0 | 8.3 | 27.3 | |||
| 581 | 1164 | 7799 | 8372 | 6.6 | 7.8 | 15.0 | 17.7 | 9.3 | 0.0 | |||
| 626 | 1153 | 7942 | 8360 | 6.6 | 8.7 | 15.0 | 10.2 | 8.3 | 27.3 | |||
Fig. 4Counties in New York and New Jersey (Source: Environmental Systems Research Institute (ESRI) (2021)).
Counties and population sizes in New York and New Jersey.
| New York | Population | New Jersey | Population | |
|---|---|---|---|---|
| New York | 1,632,480 | Hudson | 668,631 | |
| Kings | 2,600,747 | Bergen | 929,999 | |
| Queens | 2,298,513 | Essex | 793,555 | |
| Bronx | 1,437,872 | |||
| Richmond | 474,101 | |||
Migration rate among counties in New York and New Jersey.
| To | New York | Kings | Queens | Bronx | Richmond | Hudson | Bergen | Essex |
|---|---|---|---|---|---|---|---|---|
| From | ||||||||
| New York | 0.015 | 0.012 | 0.009 | 0.006 | 0.007 | 0.007 | 0.007 | |
| Kings | 0.192 | 0.038 | 0.004 | 0.004 | ||||
| Queens | 0.218 | 0.044 | 0.009 | 0.002 | ||||
| Bronx | 0.209 | 0.014 | 0.028 | 0.003 | 0.003 | |||
| Richmond | 0.105 | 0.105 | ||||||
| Hudson | 0.040 | 0.001 | 0.040 | 0.040 | ||||
| Bergen | 0.126 | 0.039 | 0.039 | |||||
| Essex | 0.079 | 0.001 | 0.057 | 0.057 |
Transmission parameters and bi-weekly rates for COVID-19.
| Parameter | Description | Data | Reference |
|---|---|---|---|
| Proportion of untested asymptomatic infections | 0.15-0.4 | ||
| Recovery rate without hospitalization | 0.69-0.79 | ||
| Death rate without hospitalization | 0.4 | Trained using real data from | |
| Hospitalization rate | 0.21-0.31 | ||
| Recovery rate with hospitalization | 0.88 | ||
| Death rate with hospitalization (No ventilators) | 0.4 | Trained using real data from | |
| Ventilator requirement rate of hospitalized | 0.12 | ||
| Recovery rate with ventilator | 0.643 | ||
| Death rate with ventilator | 0.357 | ||
| Recovery rate with asymptomatic infections | 1 |
Initial number of infections, hospital capacity, and ICU capacity for each county.
| County | Initial | Initial | Initial |
|---|---|---|---|
| Infections | Hospital Capacity | ICU Capacity | |
| New York | 1200 | 8650 | 944 |
| Kings | 1300 | 5838 | 282 |
| Queens | 1100 | 3210 | 146 |
| Bronx | 554 | 2816 | 274 |
| Richmond | 206 | 1177 | 72 |
| Hudson | 66 | 1764 | 89 |
| Bergen | 249 | 2874 | 122 |
| Essex | 73 | 3541 | 226 |
Fig. 5Comparison of predicted cases with real outbreak data for new infections in New York and New Jersey.
Statistical analysis to compare the bi-weekly predicted new cases and real outbreak data.
| County | Mean | Two-tailed paired- | |||||
|---|---|---|---|---|---|---|---|
| Outbreak | Predicted | ||||||
| New York | 7300 | 7299 | 0.20 | 2.36 | 0.58 | ||
| Kings | 7413 | 7754 | 0.41 | 0.65 | |||
| Queens | 8138 | 8751 | 0.21 | 0.58 | |||
| Bronx | 5956 | 6214 | 0.46 | 0.67 | |||
| Richmond | 1762 | 2040 | 0.04 | 0.51 | |||
| Hudson | 2455 | 2806 | 0.16 | 0.56 | |||
| Bergen | 2444 | 2656 | 0.30 | 0.61 | |||
| Essex | 2366 | 2948 | 0.04 | 0.51 | |||
Fig. 6Number of new infections and deaths under different intervention strategies and actual numbers (numbers are rounded in thousands).
Fig. 7Number of hospitalized individuals and ICU patients under different intervention strategies (numbers are rounded in thousands).
Optimal ventilator allocation under different scenarios and budgets with unit ventilator cost of $5000.
| Scenario | County | Stage | Stage | Total | Stage | Stage | Total | Stage | Stage | Total |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | Ventilator | 1 | 2 | Ventilator | 1 | 2 | Ventilator | ||
| (Budget= | (Budget= | (Budget= | ||||||||
| All Low | New York | 0 | 0 | 0 | 0 | 86 | 86 | 780 | 82 | |
| Kings | 119 | 0 | 119 | 418 | 0 | 418 | 120 | 1950 | ||
| Queens | 105 | 1120 | 1225 | 1225 | 0 | 1225 | 4 | 0 | 4 | |
| Bronx | 28 | 0 | 28 | 28 | 988 | 1016 | 28 | 988 | 1016 | |
| Richmond | 18 | 0 | 18 | 18 | 314 | 332 | 17 | 315 | ||
| Hudson | 0 | 250 | 250 | 247 | 3 | 0 | 250 | |||
| Bergen | 14 | 128 | 142 | 13 | 438 | 451 | 13 | 438 | ||
| Essex | 0 | 218 | 218 | 218 | 0 | 218 | 0 | 218 | ||
| All Medium | New York | 0 | 0 | 0 | 0 | 0 | 0 | 780 | 0 | 780 |
| Kings | 119 | 0 | 119 | 418 | 25 | 443 | 120 | 1950 | 2070 | |
| Queens | 105 | 776 | 881 | 1225 | 0 | 1225 | 4 | 1187 | 1191 | |
| Bronx | 28 | 44 | 72 | 28 | 988 | 1016 | 28 | 989 | 1017 | |
| Richmond | 18 | 0 | 18 | 18 | 379 | 397 | 17 | 6 | 23 | |
| Hudson | 0 | 245 | 245 | 247 | 3 | 250 | 0 | 250 | 250 | |
| Bergen | 14 | 437 | 451 | 13 | 438 | 451 | 13 | 438 | 451 | |
| Essex | 0 | 214 | 214 | 218 | 0 | 218 | 0 | 218 | 218 | |
| All High | New York | 0 | 0 | 0 | 0 | 0 | 0 | 780 | 82 | |
| Kings | 119 | 0 | 119 | 418 | 0 | 418 | 120 | 1950 | 2070 | |
| Queens | 105 | 137 | 242 | 1225 | 0 | 1225 | 4 | 0 | 4 | |
| Bronx | 28 | 924 | 952 | 28 | 988 | 1016 | 28 | 988 | 1016 | |
| Richmond | 18 | 0 | 18 | 18 | 404 | 422 | 17 | 34 | 51 | |
| Hudson | 0 | 0 | 0 | 247 | 3 | 250 | 0 | 0 | 0 | |
| Bergen | 14 | 437 | 451 | 13 | 438 | 451 | 13 | 438 | 451 | |
| Essex | 0 | 218 | 218 | 218 | 0 | 218 | 0 | 218 | 218 | |
Some of the ventilators are allocated at stages three and four.
Comparison of objective value, expected impact, and expected risk under various risk-averseness levels.
| Risk | Weak | Mild | Strong | |
|---|---|---|---|---|
| Neutral | Risk-aversion | Risk-aversion | Risk-aversion | |
| ( | ( | ( | ( | |
| Objective Value | 358,030 | 721,710 | 3,997,129 | 4,011,964 |
| Expected Impact | 358,030 | 360,438 | 362,559 | 363,526 |
| Expected Risk | 421,827 | 361,272 | 363,457 | 364,844 |
Expected impact and risk for different risk-averseness levels.
| 0.3 | 0.6 | 0.95 | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Expected | Expected | Expected | Expected | Expected | Expected | ||||
| Impact | Risk | Impact | Risk | Impact | Risk | ||||
| 358,030 | 376,318 | 358,030 | 392,273 | 358,030 | 421.827 | ||||
| 360,438 | 361,272 | 361,950 | 363,251 | 363,882 | 365,236 | ||||
| 360,880 | 361,341 | 362,559 | 363,457 | 363,526 | 364,844 | ||||