Literature DB >> 11053839

Single-wavelength anomalous diffraction phasing revisited.

L M Rice1, T N Earnest, A T Brunger.   

Abstract

Multiwavelength anomalous diffraction (MAD) phasing has become a routinely used tool for determining new macromolecular structures. The MAD method has stringent data-collection requirements, typically necessitating radiation-resistant crystals and access to a tunable synchrotron beamline. In cases where synchrotron time, monochromator tunability or radiation damage is a concern or where high-throughput structure determination is desired, phasing methods capable of producing interpretable electron-density maps from less data become attractive alternatives to MAD. The increasing availability of tunable synchrotron data-collection facilities prompted the authors to revisit single-wavelength anomalous diffraction (SAD) phasing used in conjunction with a phase-ambiguity resolving method such as solvent flattening. The anomalous diffraction from seven different selenomethionine-labelled protein crystals has been analysed and it is shown that in conjunction with solvent flattening, diffraction data from the peak anomalous wavelength alone can produce interpretable electron-density maps of comparable quality to those resulting from full MAD phasing. Single-wavelength anomalous diffraction (SAD) phasing can therefore be a time-efficient alternative to MAD. The data also show that radiation damage can have a significant effect on the quality of SAD/MAD diffraction data. These results may be useful in the design of optimal strategies for collection of the diffraction data.

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Year:  2000        PMID: 11053839     DOI: 10.1107/s0907444900010039

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  48 in total

1.  Autotracing of Escherichia coli acetate CoA-transferase alpha-subunit structure using 3.4 A MAD and 1.9 A native data.

Authors:  S Korolev; O Koroleva; K Petterson; M Gu; F Collart; I Dementieva; A Joachimiak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-11-23

2.  Crystallization and preliminary X-ray crystallographic analysis of dihydrouridine synthase from Thermus thermophilus and its complex with tRNA.

Authors:  Futao Yu; Yoshikazu Tanaka; Shiho Yamamoto; Akiyoshi Nakamura; Shunsuke Kita; Nagisa Hirano; Isao Tanaka; Min Yao
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-05-25

3.  Preliminary X-ray crystallographic study of the receptor-binding domain of the D/C mosaic neurotoxin from Clostridium botulinum.

Authors:  Nipawan Nuemket; Yoshikazu Tanaka; Kentaro Tsukamoto; Takao Tsuji; Keiji Nakamura; Shunji Kozaki; Min Yao; Isao Tanaka
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-04-30

4.  Multi-crystal anomalous diffraction for low-resolution macromolecular phasing.

Authors:  Qun Liu; Zhen Zhang; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-12-16

5.  Cytotoxic mechanism of selenomethionine in yeast.

Authors:  Toshihiko Kitajima; Yoshifumi Jigami; Yasunori Chiba
Journal:  J Biol Chem       Date:  2012-02-06       Impact factor: 5.157

6.  Structure of dihydrouridine synthase C (DusC) from Escherichia coli.

Authors:  Minghao Chen; Jian Yu; Yoshikazu Tanaka; Miyuki Tanaka; Isao Tanaka; Min Yao
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-07-27

7.  Crystal structure of the Mp1p ligand binding domain 2 reveals its function as a fatty acid-binding protein.

Authors:  Shuang Liao; Edward T K Tung; Wei Zheng; Ken Chong; Yuanyuan Xu; Peng Dai; Yingying Guo; Mark Bartlam; Kwok-Yung Yuen; Zihe Rao
Journal:  J Biol Chem       Date:  2010-01-06       Impact factor: 5.157

8.  Structural snapshots of heparin depolymerization by heparin lyase I.

Authors:  Young-Hyun Han; Marie-Line Garron; Hye-Yeon Kim; Wan-Seok Kim; Zhenqing Zhang; Kyeong-Seok Ryu; David Shaya; Zhongping Xiao; Chaejoon Cheong; Yeong Shik Kim; Robert J Linhardt; Young Ho Jeon; Miroslaw Cygler
Journal:  J Biol Chem       Date:  2009-10-02       Impact factor: 5.157

9.  Structure and transformation of bacteriophage A511 baseplate and tail upon infection of Listeria cells.

Authors:  Ricardo C Guerrero-Ferreira; Mario Hupfeld; Sergey Nazarov; Nicholas Mi Taylor; Mikhail M Shneider; Jagan M Obbineni; Martin J Loessner; Takashi Ishikawa; Jochen Klumpp; Petr G Leiman
Journal:  EMBO J       Date:  2019-01-02       Impact factor: 11.598

10.  The tuberous sclerosis complex subunit TBC1D7 is stabilized by Akt phosphorylation-mediated 14-3-3 binding.

Authors:  James P Madigan; Feng Hou; Linlei Ye; Jicheng Hu; Aiping Dong; Wolfram Tempel; Marielle E Yohe; Paul A Randazzo; Lisa M Miller Jenkins; Michael M Gottesman; Yufeng Tong
Journal:  J Biol Chem       Date:  2018-08-24       Impact factor: 5.157

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