Literature DB >> 33936409

Finding Causal Mechanistic Drug-Drug Interactions from Observational Data.

Sanjoy Dey1, Ping Zhang2, Mohamed Ghalwash1, Chandramouli Maduri1, Daby Sow1, Zach Shahn1.   

Abstract

Many adverse drug reactions (ADRs) are caused by drug-drug interactions (DDIs), meaning they arise from concurrent use of multiple medications. Detecting DDIs using observational data has at least three major challenges: (1) The number of potential DDIs is astronomical; (2) Associations between drugs and ADRs may not be causal due to observed or unobserved confounding; and (3) Frequently co-prescribed drug pairs that each independently cause an ADR do not necessarily causally interact, where causal interaction means that at least some patients would only experience the ADR if they take both drugs. We address (1) through data mining algorithms pre-filtering potential interactions, and (2) and (3) by fitting causal interaction models adjusting for observed confounders and conducting sensitivity analyses for unobserved confounding. We rank candidate DDIs robust to unobserved confounding more likely to be real. Our rigorous approach produces far fewer false positives than past applications that ignored (2) and (3). ©2020 AMIA - All rights reserved.

Entities:  

Year:  2021        PMID: 33936409      PMCID: PMC8075465     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  25 in total

1.  A structural approach to selection bias.

Authors:  Miguel A Hernán; Sonia Hernández-Díaz; James M Robins
Journal:  Epidemiology       Date:  2004-09       Impact factor: 4.822

2.  Biclustering of adverse drug events in the FDA's spontaneous reporting system.

Authors:  R Harpaz; H Perez; H S Chase; R Rabadan; G Hripcsak; C Friedman
Journal:  Clin Pharmacol Ther       Date:  2010-12-29       Impact factor: 6.875

3.  Data-driven prediction of drug effects and interactions.

Authors:  Nicholas P Tatonetti; Patrick P Ye; Roxana Daneshjou; Russ B Altman
Journal:  Sci Transl Med       Date:  2012-03-14       Impact factor: 17.956

4.  Mining multi-item drug adverse effect associations in spontaneous reporting systems.

Authors:  Rave Harpaz; Herbert S Chase; Carol Friedman
Journal:  BMC Bioinformatics       Date:  2010-10-28       Impact factor: 3.169

5.  Performance of pharmacovigilance signal-detection algorithms for the FDA adverse event reporting system.

Authors:  R Harpaz; W DuMouchel; P LePendu; A Bauer-Mehren; P Ryan; N H Shah
Journal:  Clin Pharmacol Ther       Date:  2013-02-11       Impact factor: 6.875

6.  Sensitivity Analysis Without Assumptions.

Authors:  Peng Ding; Tyler J VanderWeele
Journal:  Epidemiology       Date:  2016-05       Impact factor: 4.822

7.  The SIDER database of drugs and side effects.

Authors:  Michael Kuhn; Ivica Letunic; Lars Juhl Jensen; Peer Bork
Journal:  Nucleic Acids Res       Date:  2015-10-19       Impact factor: 16.971

8.  Principles of confounder selection.

Authors:  Tyler J VanderWeele
Journal:  Eur J Epidemiol       Date:  2019-03-06       Impact factor: 8.082

9.  Systematic prediction of pharmacodynamic drug-drug interactions through protein-protein-interaction network.

Authors:  Jialiang Huang; Chaoqun Niu; Christopher D Green; Lun Yang; Hongkang Mei; Jing-Dong J Han
Journal:  PLoS Comput Biol       Date:  2013-03-21       Impact factor: 4.475

10.  DDI-CPI, a server that predicts drug-drug interactions through implementing the chemical-protein interactome.

Authors:  Heng Luo; Ping Zhang; Hui Huang; Jialiang Huang; Emily Kao; Leming Shi; Lin He; Lun Yang
Journal:  Nucleic Acids Res       Date:  2014-05-29       Impact factor: 16.971

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