Literature DB >> 23571771

Performance of pharmacovigilance signal-detection algorithms for the FDA adverse event reporting system.

R Harpaz1, W DuMouchel, P LePendu, A Bauer-Mehren, P Ryan, N H Shah.   

Abstract

Signal-detection algorithms (SDAs) are recognized as vital tools in pharmacovigilance. However, their performance characteristics are generally unknown. By leveraging a unique gold standard recently made public by the Observational Medical Outcomes Partnership (OMOP) and by conducting a unique systematic evaluation, we provide new insights into the diagnostic potential and characteristics of SDAs that are routinely applied to the US Food and Drug Administration (FDA) Adverse Event Reporting System (AERS). We find that SDAs can attain reasonable predictive accuracy in signaling adverse events. Two performance classes emerge, indicating that the class of approaches that address confounding and masking effects benefits safety surveillance. Our study shows that not all events are equally detectable, suggesting that specific events might be monitored more effectively using other data sources. We provide performance guidelines for several operating scenarios to inform the trade-off between sensitivity and specificity for specific use cases. We also propose an approach and demonstrate its application in identifying optimal signaling thresholds, given specific misclassification tolerances.

Entities:  

Mesh:

Year:  2013        PMID: 23571771      PMCID: PMC3857139          DOI: 10.1038/clpt.2013.24

Source DB:  PubMed          Journal:  Clin Pharmacol Ther        ISSN: 0009-9236            Impact factor:   6.875


  37 in total

1.  Use of proportional reporting ratios (PRRs) for signal generation from spontaneous adverse drug reaction reports.

Authors:  S J Evans; P C Waller; S Davis
Journal:  Pharmacoepidemiol Drug Saf       Date:  2001 Oct-Nov       Impact factor: 2.890

2.  Use of screening algorithms and computer systems to efficiently signal higher-than-expected combinations of drugs and events in the US FDA's spontaneous reports database.

Authors:  Ana Szarfman; Stella G Machado; Robert T O'Neill
Journal:  Drug Saf       Date:  2002       Impact factor: 5.606

3.  Are all quantitative postmarketing signal detection methods equal? Performance characteristics of logistic regression and Multi-item Gamma Poisson Shrinker.

Authors:  Conny Berlin; Carles Blanch; David J Lewis; Dionigi D Maladorno; Christiane Michel; Michael Petrin; Severine Sarp; Philippe Close
Journal:  Pharmacoepidemiol Drug Saf       Date:  2011-10-12       Impact factor: 2.890

4.  Validation of statistical signal detection procedures in eudravigilance post-authorization data: a retrospective evaluation of the potential for earlier signalling.

Authors:  Yolanda Alvarez; Ana Hidalgo; Francois Maignen; Jim Slattery
Journal:  Drug Saf       Date:  2010-06-01       Impact factor: 5.606

5.  Advancing the science for active surveillance: rationale and design for the Observational Medical Outcomes Partnership.

Authors:  Paul E Stang; Patrick B Ryan; Judith A Racoosin; J Marc Overhage; Abraham G Hartzema; Christian Reich; Emily Welebob; Thomas Scarnecchia; Janet Woodcock
Journal:  Ann Intern Med       Date:  2010-11-02       Impact factor: 25.391

Review 6.  Quantitative signal detection using spontaneous ADR reporting.

Authors:  A Bate; S J W Evans
Journal:  Pharmacoepidemiol Drug Saf       Date:  2009-06       Impact factor: 2.890

7.  The new Sentinel Network--improving the evidence of medical-product safety.

Authors:  Richard Platt; Marcus Wilson; K Arnold Chan; Joshua S Benner; Janet Marchibroda; Mark McClellan
Journal:  N Engl J Med       Date:  2009-07-27       Impact factor: 91.245

8.  Data mining on electronic health record databases for signal detection in pharmacovigilance: which events to monitor?

Authors:  Gianluca Trifirò; Antoine Pariente; Preciosa M Coloma; Jan A Kors; Giovanni Polimeni; Ghada Miremont-Salamé; Maria Antonietta Catania; Francesco Salvo; Anaelle David; Nicholas Moore; Achille Patrizio Caputi; Miriam Sturkenboom; Mariam Molokhia; Julia Hippisley-Cox; Carlos Diaz Acedo; Johan van der Lei; Annie Fourrier-Reglat
Journal:  Pharmacoepidemiol Drug Saf       Date:  2009-12       Impact factor: 2.890

9.  A basic study design for expedited safety signal evaluation based on electronic healthcare data.

Authors:  Sebastian Schneeweiss
Journal:  Pharmacoepidemiol Drug Saf       Date:  2010-08       Impact factor: 2.890

Review 10.  Novel data-mining methodologies for adverse drug event discovery and analysis.

Authors:  R Harpaz; W DuMouchel; N H Shah; D Madigan; P Ryan; C Friedman
Journal:  Clin Pharmacol Ther       Date:  2012-06       Impact factor: 6.875

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  95 in total

1.  A method for systematic discovery of adverse drug events from clinical notes.

Authors:  Guan Wang; Kenneth Jung; Rainer Winnenburg; Nigam H Shah
Journal:  J Am Med Inform Assoc       Date:  2015-07-31       Impact factor: 4.497

2.  A Multiagent System for Integrated Detection of Pharmacovigilance Signals.

Authors:  Vassilis Koutkias; Marie-Christine Jaulent
Journal:  J Med Syst       Date:  2015-11-21       Impact factor: 4.460

3.  Evidence of Misclassification of Drug-Event Associations Classified as Gold Standard 'Negative Controls' by the Observational Medical Outcomes Partnership (OMOP).

Authors:  Manfred Hauben; Jeffrey K Aronson; Robin E Ferner
Journal:  Drug Saf       Date:  2016-05       Impact factor: 5.606

4.  Text mining for adverse drug events: the promise, challenges, and state of the art.

Authors:  Rave Harpaz; Alison Callahan; Suzanne Tamang; Yen Low; David Odgers; Sam Finlayson; Kenneth Jung; Paea LePendu; Nigam H Shah
Journal:  Drug Saf       Date:  2014-10       Impact factor: 5.606

5.  Using aggregated, de-identified electronic health record data for multivariate pharmacosurveillance: a case study of azathioprine.

Authors:  Vishal N Patel; David C Kaelber
Journal:  J Biomed Inform       Date:  2013-10-28       Impact factor: 6.317

6.  Ongoing challenges in pharmacovigilance.

Authors:  Gerald J Dal Pan
Journal:  Drug Saf       Date:  2014-01       Impact factor: 5.606

7.  Comparison of statistical signal detection methods within and across spontaneous reporting databases.

Authors:  Gianmario Candore; Kristina Juhlin; Katrin Manlik; Bharat Thakrar; Naashika Quarcoo; Suzie Seabroke; Antoni Wisniewski; Jim Slattery
Journal:  Drug Saf       Date:  2015-06       Impact factor: 5.606

8.  Detection of signals of abuse and dependence applying disproportionality analysis.

Authors:  V Pauly; M Lapeyre-Mestre; D Braunstein; M Rueter; X Thirion; E Jouanjus; J Micallef
Journal:  Eur J Clin Pharmacol       Date:  2014-11-20       Impact factor: 2.953

9.  Comment on: "Zoo or savannah? Choice of training ground for evidence-based pharmacovigilance".

Authors:  Rave Harpaz; William DuMouchel; Nigam H Shah
Journal:  Drug Saf       Date:  2015-01       Impact factor: 5.606

10.  A Comparison Study of Algorithms to Detect Drug-Adverse Event Associations: Frequentist, Bayesian, and Machine-Learning Approaches.

Authors:  Minh Pham; Feng Cheng; Kandethody Ramachandran
Journal:  Drug Saf       Date:  2019-06       Impact factor: 5.606

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