Literature DB >> 33930627

Programmable technologies to manipulate gene expression at the RNA level.

Huachun Liu1, Simone Rauch1, Bryan C Dickinson2.   

Abstract

RNA has long been an enticing therapeutic target, but is now garnering increased attention, largely driven by clinical successes of RNA interference-based drugs. While gene knockdown by well-established RNA interference- and other oligonucleotide-based strategies continues to advance in the clinic, the repertoire of targetable effectors capable of altering gene expression at the RNA level is also rapidly expanding. In this review, we focus on several recently developed bifunctional molecular technologies that both interact with and act upon a target RNA. These new approaches for programmable RNA knockdown, editing, splicing, translation, and chemical modifications stand to provide impactful new modalities for therapeutic development in the coming decades.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CIRTS; CRISPR/Cas13; Epitranscriptomics; Genetic therapies; Transcriptome regulation

Mesh:

Substances:

Year:  2021        PMID: 33930627      PMCID: PMC8548394          DOI: 10.1016/j.cbpa.2021.03.004

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.972


  93 in total

1.  N6 -Methyladenosine-Sensitive RNA-Cleaving Deoxyribozymes.

Authors:  Maksim V Sednev; Volodymyr Mykhailiuk; Priyanka Choudhury; Julia Halang; Katherine E Sloan; Markus T Bohnsack; Claudia Höbartner
Journal:  Angew Chem Int Ed Engl       Date:  2018-10-24       Impact factor: 15.336

2.  Dynamic Imaging of RNA in Living Cells by CRISPR-Cas13 Systems.

Authors:  Liang-Zhong Yang; Yang Wang; Si-Qi Li; Run-Wen Yao; Peng-Fei Luan; Huang Wu; Gordon G Carmichael; Ling-Ling Chen
Journal:  Mol Cell       Date:  2019-11-19       Impact factor: 17.970

3.  Programmable RNA methylation and demethylation using PUF RNA binding proteins.

Authors:  Kouki Shinoda; Akiyo Suda; Kenko Otonari; Shiroh Futaki; Miki Imanishi
Journal:  Chem Commun (Camb)       Date:  2020-01-07       Impact factor: 6.222

Review 4.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

5.  Visualizing RNA Conformational Changes via Pattern Recognition of RNA by Small Molecules.

Authors:  Christopher S Eubanks; Bo Zhao; Neeraj N Patwardhan; Rhese D Thompson; Qi Zhang; Amanda E Hargrove
Journal:  J Am Chem Soc       Date:  2019-03-26       Impact factor: 15.419

6.  Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors.

Authors:  Silvana Konermann; Peter Lotfy; Nicholas J Brideau; Jennifer Oki; Maxim N Shokhirev; Patrick D Hsu
Journal:  Cell       Date:  2018-03-15       Impact factor: 41.582

7.  Inforna 2.0: A Platform for the Sequence-Based Design of Small Molecules Targeting Structured RNAs.

Authors:  Matthew D Disney; Audrey M Winkelsas; Sai Pradeep Velagapudi; Mark Southern; Mohammad Fallahi; Jessica L Childs-Disney
Journal:  ACS Chem Biol       Date:  2016-04-20       Impact factor: 5.100

Review 8.  CRISPR-Based Technologies for the Manipulation of Eukaryotic Genomes.

Authors:  Alexis C Komor; Ahmed H Badran; David R Liu
Journal:  Cell       Date:  2016-11-17       Impact factor: 41.582

9.  CRISPR artificial splicing factors.

Authors:  Menghan Du; Nathaniel Jillette; Jacqueline Jufen Zhu; Sheng Li; Albert Wu Cheng
Journal:  Nat Commun       Date:  2020-06-12       Impact factor: 14.919

10.  Landscape of transcription in human cells.

Authors:  Sarah Djebali; Carrie A Davis; Angelika Merkel; Alex Dobin; Timo Lassmann; Ali Mortazavi; Andrea Tanzer; Julien Lagarde; Wei Lin; Felix Schlesinger; Chenghai Xue; Georgi K Marinov; Jainab Khatun; Brian A Williams; Chris Zaleski; Joel Rozowsky; Maik Röder; Felix Kokocinski; Rehab F Abdelhamid; Tyler Alioto; Igor Antoshechkin; Michael T Baer; Nadav S Bar; Philippe Batut; Kimberly Bell; Ian Bell; Sudipto Chakrabortty; Xian Chen; Jacqueline Chrast; Joao Curado; Thomas Derrien; Jorg Drenkow; Erica Dumais; Jacqueline Dumais; Radha Duttagupta; Emilie Falconnet; Meagan Fastuca; Kata Fejes-Toth; Pedro Ferreira; Sylvain Foissac; Melissa J Fullwood; Hui Gao; David Gonzalez; Assaf Gordon; Harsha Gunawardena; Cedric Howald; Sonali Jha; Rory Johnson; Philipp Kapranov; Brandon King; Colin Kingswood; Oscar J Luo; Eddie Park; Kimberly Persaud; Jonathan B Preall; Paolo Ribeca; Brian Risk; Daniel Robyr; Michael Sammeth; Lorian Schaffer; Lei-Hoon See; Atif Shahab; Jorgen Skancke; Ana Maria Suzuki; Hazuki Takahashi; Hagen Tilgner; Diane Trout; Nathalie Walters; Huaien Wang; John Wrobel; Yanbao Yu; Xiaoan Ruan; Yoshihide Hayashizaki; Jennifer Harrow; Mark Gerstein; Tim Hubbard; Alexandre Reymond; Stylianos E Antonarakis; Gregory Hannon; Morgan C Giddings; Yijun Ruan; Barbara Wold; Piero Carninci; Roderic Guigó; Thomas R Gingeras
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

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  1 in total

1.  Optimization of specific RNA knockdown in mammalian cells with CRISPR-Cas13.

Authors:  Brandon Joseph Davis Burris; Adrian Moises Molina Vargas; Brandon J Park; Mitchell R O'Connell
Journal:  Methods       Date:  2022-08-17       Impact factor: 4.647

  1 in total

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