Literature DB >> 33927380

Next-generation sequencing for constitutional variants in the clinical laboratory, 2021 revision: a technical standard of the American College of Medical Genetics and Genomics (ACMG).

Catherine Rehder1, Lora J H Bean2, David Bick3, Elizabeth Chao4, Wendy Chung5, Soma Das6, Julianne O'Daniel7, Heidi Rehm8,9, Vandana Shashi10, Lisa M Vincent11,12.   

Abstract

Next-generation sequencing (NGS) technologies are now established in clinical laboratories as a primary testing modality in genomic medicine. These technologies have reduced the cost of large-scale sequencing by several orders of magnitude. It is now cost-effective to analyze an individual with disease-targeted gene panels, exome sequencing, or genome sequencing to assist in the diagnosis of a wide array of clinical scenarios. While clinical validation and use of NGS in many settings is established, there are continuing challenges as technologies and the associated informatics evolve. To assist clinical laboratories with the validation of NGS methods and platforms, the ongoing monitoring of NGS testing to ensure quality results, and the interpretation and reporting of variants found using these technologies, the American College of Medical Genetics and Genomics (ACMG) has developed the following technical standards.
© 2021. The Author(s), under exclusive licence to the American College of Medical Genetics and Genomics.

Entities:  

Mesh:

Year:  2021        PMID: 33927380     DOI: 10.1038/s41436-021-01139-4

Source DB:  PubMed          Journal:  Genet Med        ISSN: 1098-3600            Impact factor:   8.822


  106 in total

Review 1.  Towards clinical utility of polygenic risk scores.

Authors:  Samuel A Lambert; Gad Abraham; Michael Inouye
Journal:  Hum Mol Genet       Date:  2019-11-21       Impact factor: 6.150

2.  MosaicHunter: accurate detection of postzygotic single-nucleotide mosaicism through next-generation sequencing of unpaired, trio, and paired samples.

Authors:  August Yue Huang; Zheng Zhang; Adam Yongxin Ye; Yanmei Dou; Linlin Yan; Xiaoxu Yang; Yuehua Zhang; Liping Wei
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

Review 3.  Designing and Implementing NGS Tests for Inherited Disorders: A Practical Framework with Step-by-Step Guidance for Clinical Laboratories.

Authors:  Avni Santani; Birgitte B Simen; Marian Briggs; Matthew Lebo; Jason D Merker; Marina Nikiforova; Patricia Vasalos; Karl Voelkerding; John Pfeifer; Birgit Funke
Journal:  J Mol Diagn       Date:  2018-12-31       Impact factor: 5.568

4.  Diagnostic gene sequencing panels: from design to report-a technical standard of the American College of Medical Genetics and Genomics (ACMG).

Authors:  Lora J H Bean; Birgit Funke; Colleen M Carlston; Jennifer L Gannon; Sibel Kantarci; Bryan L Krock; Shulin Zhang; Pinar Bayrak-Toydemir
Journal:  Genet Med       Date:  2019-11-16       Impact factor: 8.822

5.  ACMG clinical laboratory standards for next-generation sequencing.

Authors:  Heidi L Rehm; Sherri J Bale; Pinar Bayrak-Toydemir; Jonathan S Berg; Kerry K Brown; Joshua L Deignan; Michael J Friez; Birgit H Funke; Madhuri R Hegde; Elaine Lyon
Journal:  Genet Med       Date:  2013-07-25       Impact factor: 8.822

Review 6.  Case for genome sequencing in infants and children with rare, undiagnosed or genetic diseases.

Authors:  David Bick; Marilyn Jones; Stacie L Taylor; Ryan J Taft; John Belmont
Journal:  J Med Genet       Date:  2019-04-25       Impact factor: 6.318

7.  Clinical sequencing: is WGS the better WES?

Authors:  Janine Meienberg; Rémy Bruggmann; Konrad Oexle; Gabor Matyas
Journal:  Hum Genet       Date:  2016-01-07       Impact factor: 4.132

8.  Whole Genome Sequencing Expands Diagnostic Utility and Improves Clinical Management in Pediatric Medicine.

Authors:  Dimitri J Stavropoulos; Daniele Merico; Rebekah Jobling; Sarah Bowdin; Nasim Monfared; Bhooma Thiruvahindrapuram; Thomas Nalpathamkalam; Giovanna Pellecchia; Ryan K C Yuen; Michael J Szego; Robin Z Hayeems; Randi Zlotnik Shaul; Michael Brudno; Marta Girdea; Brendan Frey; Babak Alipanahi; Sohnee Ahmed; Riyana Babul-Hirji; Ramses Badilla Porras; Melissa T Carter; Lauren Chad; Ayeshah Chaudhry; David Chitayat; Soghra Jougheh Doust; Cheryl Cytrynbaum; Lucie Dupuis; Resham Ejaz; Leona Fishman; Andrea Guerin; Bita Hashemi; Mayada Helal; Stacy Hewson; Michal Inbar-Feigenberg; Peter Kannu; Natalya Karp; Raymond Kim; Jonathan Kronick; Eriskay Liston; Heather MacDonald; Saadet Mercimek-Mahmutoglu; Roberto Mendoza-Londono; Enas Nasr; Graeme Nimmo; Nicole Parkinson; Nada Quercia; Julian Raiman; Maian Roifman; Andreas Schulze; Andrea Shugar; Cheryl Shuman; Pierre Sinajon; Komudi Siriwardena; Rosanna Weksberg; Grace Yoon; Chris Carew; Raith Erickson; Richard A Leach; Robert Klein; Peter N Ray; M Stephen Meyn; Stephen W Scherer; Ronald D Cohn; Christian R Marshall
Journal:  NPJ Genom Med       Date:  2016-01-13       Impact factor: 8.617

9.  Improved diagnostic yield compared with targeted gene sequencing panels suggests a role for whole-genome sequencing as a first-tier genetic test.

Authors:  Anath C Lionel; Gregory Costain; Nasim Monfared; Susan Walker; Miriam S Reuter; S Mohsen Hosseini; Bhooma Thiruvahindrapuram; Daniele Merico; Rebekah Jobling; Thomas Nalpathamkalam; Giovanna Pellecchia; Wilson W L Sung; Zhuozhi Wang; Peter Bikangaga; Cyrus Boelman; Melissa T Carter; Dawn Cordeiro; Cheryl Cytrynbaum; Sharon D Dell; Priya Dhir; James J Dowling; Elise Heon; Stacy Hewson; Linda Hiraki; Michal Inbar-Feigenberg; Regan Klatt; Jonathan Kronick; Ronald M Laxer; Christoph Licht; Heather MacDonald; Saadet Mercimek-Andrews; Roberto Mendoza-Londono; Tino Piscione; Rayfel Schneider; Andreas Schulze; Earl Silverman; Komudi Siriwardena; O Carter Snead; Neal Sondheimer; Joanne Sutherland; Ajoy Vincent; Jonathan D Wasserman; Rosanna Weksberg; Cheryl Shuman; Chris Carew; Michael J Szego; Robin Z Hayeems; Raveen Basran; Dimitri J Stavropoulos; Peter N Ray; Sarah Bowdin; M Stephen Meyn; Ronald D Cohn; Stephen W Scherer; Christian R Marshall
Journal:  Genet Med       Date:  2017-08-03       Impact factor: 8.822

10.  Meta-analysis of the diagnostic and clinical utility of genome and exome sequencing and chromosomal microarray in children with suspected genetic diseases.

Authors:  Michelle M Clark; Zornitza Stark; Lauge Farnaes; Tiong Y Tan; Susan M White; David Dimmock; Stephen F Kingsmore
Journal:  NPJ Genom Med       Date:  2018-07-09       Impact factor: 8.617

View more
  11 in total

1.  Postmortem Diagnosis of the Proteus Syndrome by Next Generation Sequencing of Affected Brain Tissue.

Authors:  Tiffany G Baker; William B Glen; Robert C Wilson; Nicholas I Batalis; Daynna J Wolff; Cynthia T Welsh
Journal:  Acad Forensic Pathol       Date:  2022-05-05

2.  The utility of pathologic examination and comprehensive phenotyping for accurate diagnosis with perinatal exome sequencing.

Authors:  Kate Swanson; Mary E Norton; Billie R Lianoglou; Angie C Jelin; Ugur Hodoglugil; Jessica Van Ziffle; Patrick Devine; Teresa N Sparks
Journal:  Prenat Diagn       Date:  2022-07-03       Impact factor: 3.242

3.  Analytical Validation of a Computational Method for Pharmacogenetic Genotyping from Clinical Whole Exome Sequencing.

Authors:  Reynold C Ly; Tyler Shugg; Ryan Ratcliff; Wilberforce Osei; Ty C Lynnes; Victoria M Pratt; Bryan P Schneider; Milan Radovich; Steven M Bray; Benjamin A Salisbury; Baiju Parikh; S Cenk Sahinalp; Ibrahim Numanagić; Todd C Skaar
Journal:  J Mol Diagn       Date:  2022-04-20       Impact factor: 5.341

4.  Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC).

Authors:  Peter Horak; Malachi Griffith; Arpad M Danos; Beth A Pitel; Subha Madhavan; Xuelu Liu; Cynthia Chow; Heather Williams; Leigh Carmody; Lisa Barrow-Laing; Damian Rieke; Simon Kreutzfeldt; Albrecht Stenzinger; David Tamborero; Manuela Benary; Padma Sheila Rajagopal; Cristiane M Ida; Harry Lesmana; Laveniya Satgunaseelan; Jason D Merker; Michael Y Tolstorukov; Paulo Vidal Campregher; Jeremy L Warner; Shruti Rao; Maya Natesan; Haolin Shen; Jeffrey Venstrom; Somak Roy; Kayoko Tao; Rashmi Kanagal-Shamanna; Xinjie Xu; Deborah I Ritter; Kym Pagel; Kilannin Krysiak; Adrian Dubuc; Yassmine M Akkari; Xuan Shirley Li; Jennifer Lee; Ian King; Gordana Raca; Alex H Wagner; Marylin M Li; Sharon E Plon; Shashikant Kulkarni; Obi L Griffith; Debyani Chakravarty; Dmitriy Sonkin
Journal:  Genet Med       Date:  2022-01-29       Impact factor: 8.864

Review 5.  Genetic testing-whether to allow complete freedom? Direct to consumer tests versus genetic tests for medical purposes.

Authors:  Madej Malgorzata; Sąsiadek Maria; Witt Michał
Journal:  J Appl Genet       Date:  2021-11-26       Impact factor: 3.240

6.  Population Structure of the South West Indian Ocean Islands: Implications for Precision Medicine.

Authors:  Anisah W Ghoorah; Toto Chaplain; Rakotoarivony Rindra; Smita Goorah; Ganessen Chinien; Yasmina Jaufeerally-Fakim
Journal:  Front Genet       Date:  2021-11-23       Impact factor: 4.599

7.  Damaging novel mutations in PIGN cause developmental epileptic-dyskinetic encephalopathy: a case report.

Authors:  Maoqiang Tian; Jing Chen; Juan Li; Hong Pan; Wenting Lei; Xiaomei Shu
Journal:  BMC Pediatr       Date:  2022-04-25       Impact factor: 2.567

8.  An automated 13.5 hour system for scalable diagnosis and acute management guidance for genetic diseases.

Authors:  Mallory J Owen; Sebastien Lefebvre; Christian Hansen; Chris M Kunard; David P Dimmock; Laurie D Smith; Gunter Scharer; Rebecca Mardach; Mary J Willis; Annette Feigenbaum; Anna-Kaisa Niemi; Yan Ding; Luca Van Der Kraan; Katarzyna Ellsworth; Lucia Guidugli; Bryan R Lajoie; Timothy K McPhail; Shyamal S Mehtalia; Kevin K Chau; Yong H Kwon; Zhanyang Zhu; Sergey Batalov; Shimul Chowdhury; Seema Rego; James Perry; Mark Speziale; Mark Nespeca; Meredith S Wright; Martin G Reese; Francisco M De La Vega; Joe Azure; Erwin Frise; Charlene Son Rigby; Sandy White; Charlotte A Hobbs; Sheldon Gilmer; Gail Knight; Albert Oriol; Jerica Lenberg; Shareef A Nahas; Kate Perofsky; Kyu Kim; Jeanne Carroll; Nicole G Coufal; Erica Sanford; Kristen Wigby; Jacqueline Weir; Vicki S Thomson; Louise Fraser; Seka S Lazare; Yoon H Shin; Haiying Grunenwald; Richard Lee; David Jones; Duke Tran; Andrew Gross; Patrick Daigle; Anne Case; Marisa Lue; James A Richardson; John Reynders; Thomas Defay; Kevin P Hall; Narayanan Veeraraghavan; Stephen F Kingsmore
Journal:  Nat Commun       Date:  2022-07-26       Impact factor: 17.694

Review 9.  Strategies to Uplift Novel Mendelian Gene Discovery for Improved Clinical Outcomes.

Authors:  Eleanor G Seaby; Heidi L Rehm; Anne O'Donnell-Luria
Journal:  Front Genet       Date:  2021-06-17       Impact factor: 4.599

10.  Online Mendelian Inheritance in Man (OMIM®): Victor McKusick's magnum opus.

Authors:  Ada Hamosh; Joanna S Amberger; Carol Bocchini; Alan F Scott; Sonja A Rasmussen
Journal:  Am J Med Genet A       Date:  2021-06-24       Impact factor: 2.802

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.