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Literature DB >> 17309896

Gepard: a rapid and sensitive tool for creating dotplots on genome scale.

Jan Krumsiek¹, Roland Arnold, Thomas Rattei.

Abstract

UNLABELLED: Gepard provides a user-friendly, interactive application for the quick creation of dotplots. It utilizes suffix arrays to reduce the time complexity of dotplot calculation to Theta(m*log n). A client-server mode, which is a novel feature for dotplot creation software, allows the user to calculate dotplots and color them by functional annotation without any prior downloading of sequence or annotation data. AVAILABILITY: Both source codes and executable binaries are available at http://mips.gsf.de/services/analysis/gepard

Mesh：

Year: 2007 PMID： 17309896 DOI： 10.1093/bioinformatics/btm039

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

323 in total

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