Literature DB >> 33909459

Threespine Stickleback: A Model System For Evolutionary Genomics.

Kerry Reid1, Michael A Bell2, Krishna R Veeramah1.   

Abstract

The repeated adaptation of oceanic threespine sticklebacks to fresh water has made it a premier organism to study parallel evolution. These small fish have multiple distinct ecotypes that display a wide range of diverse phenotypic traits. Ecotypes are easily crossed in the laboratory, and families are large and develop quickly enough for quantitative trait locus analyses, positioning the threespine stickleback as a versatile model organism to address a wide range of biological questions. Extensive genomic resources, including linkage maps, a high-quality reference genome, and developmental genetics tools have led to insights into the genomic basis of adaptation and the identification of genomic changes controlling traits in vertebrates. Recently, threespine sticklebacks have been used as a model system to identify the genomic basis of highly complex traits, such as behavior and host-microbiome and host-parasite interactions. We review the latest findings and new avenues of research that have led the threespine stickleback to be considered a supermodel of evolutionary genomics.

Entities:  

Keywords:  Gasterosteus aculeatus; behavior; genetic architecture; host–microbiome interactions; parasites; rapid parallel adaptation; standing genetic variation; vertebrate evolution

Mesh:

Year:  2021        PMID: 33909459      PMCID: PMC8415275          DOI: 10.1146/annurev-genom-111720-081402

Source DB:  PubMed          Journal:  Annu Rev Genomics Hum Genet        ISSN: 1527-8204            Impact factor:   9.340


  143 in total

1.  Adaptation from standing genetic variation.

Authors:  Rowan D H Barrett; Dolph Schluter
Journal:  Trends Ecol Evol       Date:  2007-11-14       Impact factor: 17.712

Review 2.  Supergenes and complex phenotypes.

Authors:  Tanja Schwander; Romain Libbrecht; Laurent Keller
Journal:  Curr Biol       Date:  2014-03-31       Impact factor: 10.834

3.  Massive haplotypes underlie ecotypic differentiation in sunflowers.

Authors:  Marco Todesco; Gregory L Owens; Natalia Bercovich; Jean-Sébastien Légaré; Shaghayegh Soudi; Dylan O Burge; Kaichi Huang; Katherine L Ostevik; Emily B M Drummond; Ivana Imerovski; Kathryn Lande; Mariana A Pascual-Robles; Mihir Nanavati; Mojtaba Jahani; Winnie Cheung; S Evan Staton; Stéphane Muños; Rasmus Nielsen; Lisa A Donovan; John M Burke; Sam Yeaman; Loren H Rieseberg
Journal:  Nature       Date:  2020-07-08       Impact factor: 49.962

4.  Genetic and neural modularity underlie the evolution of schooling behavior in threespine sticklebacks.

Authors:  Anna K Greenwood; Abigail R Wark; Kohta Yoshida; Catherine L Peichel
Journal:  Curr Biol       Date:  2013-09-12       Impact factor: 10.834

Review 5.  Human Microbiome and its Association With Health and Diseases.

Authors:  Asmaa A Althani; Hany E Marei; Wedad S Hamdi; Gheyath K Nasrallah; Mohamed E El Zowalaty; Souhaila Al Khodor; Maha Al-Asmakh; Hassan Abdel-Aziz; Carlo Cenciarelli
Journal:  J Cell Physiol       Date:  2016-02-11       Impact factor: 6.384

6.  Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge.

Authors:  Michael C Saul; Charles Blatti; Wei Yang; Syed A Bukhari; Hagai Y Shpigler; Joseph M Troy; Christopher H Seward; Laura Sloofman; Sriram Chandrasekaran; Alison M Bell; Lisa Stubbs; Gene E Robinson; Sihai D Zhao; Saurabh Sinha
Journal:  Genes Brain Behav       Date:  2018-07-16       Impact factor: 3.449

7.  Sequence-Based Mapping and Genome Editing Reveal Mutations in Stickleback Hps5 Cause Oculocutaneous Albinism and the casper Phenotype.

Authors:  James C Hart; Craig T Miller
Journal:  G3 (Bethesda)       Date:  2017-09-07       Impact factor: 3.154

8.  Divergent Fine-Scale Recombination Landscapes between a Freshwater and Marine Population of Threespine Stickleback Fish.

Authors:  Alice F Shanfelter; Sophie L Archambeault; Michael A White
Journal:  Genome Biol Evol       Date:  2019-06-01       Impact factor: 3.416

9.  The genomics of ecological vicariance in threespine stickleback fish.

Authors:  Marius Roesti; Benjamin Kueng; Dario Moser; Daniel Berner
Journal:  Nat Commun       Date:  2015-11-10       Impact factor: 14.919

10.  Dorsal spine evolution in threespine sticklebacks via a splicing change in MSX2A.

Authors:  Timothy R Howes; Brian R Summers; David M Kingsley
Journal:  BMC Biol       Date:  2017-12-07       Impact factor: 7.431

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  5 in total

1.  Single-cell Iso-Sequencing enables rapid genome annotation for scRNAseq analysis.

Authors:  Hope M Healey; Susan Bassham; William A Cresko
Journal:  Genetics       Date:  2022-03-03       Impact factor: 4.562

2.  Gene expression in male and female stickleback from populations with convergent and divergent throat coloration.

Authors:  Jeffrey S McKinnon; William Burns Newsome; Christopher N Balakrishnan
Journal:  Ecol Evol       Date:  2022-04-29       Impact factor: 3.167

3.  Morphometric and Genetic Description of Trophic Adaptations in Cichlid Fishes.

Authors:  Leah DeLorenzo; Victoria DeBrock; Aldo Carmona Baez; Patrick J Ciccotto; Erin N Peterson; Clare Stull; Natalie B Roberts; Reade B Roberts; Kara E Powder
Journal:  Biology (Basel)       Date:  2022-08-03

4.  Intergeneric hybridization of two stickleback species leads to introgression of membrane-associated genes and invasive TE expansion.

Authors:  Artem Nedoluzhko; Fedor Sharko; Svetlana Tsygankova; Eugenia Boulygina; Natalia Slobodova; Anton Teslyuk; Jorge Galindo-Villegas; Sergey Rastorguev
Journal:  Front Genet       Date:  2022-08-25       Impact factor: 4.772

5.  Freshwater Colonization, Adaptation, and Genomic Divergence in Threespine Stickleback.

Authors:  Windsor E Aguirre; Kerry Reid; Jessica Rivera; David C Heins; Krishna R Veeramah; Michael A Bell
Journal:  Integr Comp Biol       Date:  2022-08-25       Impact factor: 3.392

  5 in total

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