Literature DB >> 33900606

Measurement of Genetic Mobility Using a Transposon-Based Marker System in Sorghum.

Jae Il Lyu1, Yeong Deuk Jo1, Joon-Woo Ahn1, Jin-Baek Kim1, Soon-Jae Kwon2.   

Abstract

Transposable elements (TEs) are ubiquitous repetitive components of eukaryotic organisms that show mobility in the genome against diverse stresses. TEs contribute considerably to the size, structure, and plasticity of genomes and also play an active role in genome evolution by helping their hosts adapt to novel conditions by conferring useful characteristics. We developed a simple and rapid method for investigation of genetic mobility and diversity among TEs in combination with a target region amplification polymorphism (TE-TRAP) marker system in gamma-irradiated sorghum mutants. The TE-TRAP marker system reveals a high level of genetic diversity, which provides a useful marker resource for genetic mobility research.

Entities:  

Keywords:  Genetic diversity; PCR-based marker; Sorghum bicolor; TE-TRAP; Transposable elements

Year:  2021        PMID： 33900606     DOI： 10.1007/978-1-0716-1134-0_19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  17 in total

Review 1.  Plant transposable elements: where genetics meets genomics.

Authors:  Cédric Feschotte; Ning Jiang; Susan R Wessler
Journal:  Nat Rev Genet       Date:  2002-05       Impact factor: 53.242

Review 2.  Molecular markers from the transcribed/expressed region of the genome in higher plants.

Authors:  P K Gupta; S Rustgi
Journal:  Funct Integr Genomics       Date:  2004-04-17       Impact factor: 3.410

3.  The origin and behavior of mutable loci in maize.

Authors:  B McCLINTOCK
Journal:  Proc Natl Acad Sci U S A       Date:  1950-06       Impact factor: 11.205

Review 4.  Coming of age: ten years of next-generation sequencing technologies.

Authors:  Sara Goodwin; John D McPherson; W Richard McCombie
Journal:  Nat Rev Genet       Date:  2016-05-17       Impact factor: 53.242

5.  Molecular paleontology of transposable elements from Arabidopsis thaliana.

Authors:  V V Kapitonov; J Jurka
Journal:  Genetica       Date:  1999       Impact factor: 1.082

6.  P instability factor: an active maize transposon system associated with the amplification of Tourist-like MITEs and a new superfamily of transposases.

Authors:  X Zhang; C Feschotte; Q Zhang; N Jiang; W B Eggleston; S R Wessler
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-02       Impact factor: 11.205

7.  The Sorghum bicolor genome and the diversification of grasses.

Authors:  Andrew H Paterson; John E Bowers; Rémy Bruggmann; Inna Dubchak; Jane Grimwood; Heidrun Gundlach; Georg Haberer; Uffe Hellsten; Therese Mitros; Alexander Poliakov; Jeremy Schmutz; Manuel Spannagl; Haibao Tang; Xiyin Wang; Thomas Wicker; Arvind K Bharti; Jarrod Chapman; F Alex Feltus; Udo Gowik; Igor V Grigoriev; Eric Lyons; Christopher A Maher; Mihaela Martis; Apurva Narechania; Robert P Otillar; Bryan W Penning; Asaf A Salamov; Yu Wang; Lifang Zhang; Nicholas C Carpita; Michael Freeling; Alan R Gingle; C Thomas Hash; Beat Keller; Patricia Klein; Stephen Kresovich; Maureen C McCann; Ray Ming; Daniel G Peterson; Doreen Ware; Peter Westhoff; Klaus F X Mayer; Joachim Messing; Daniel S Rokhsar
Journal:  Nature       Date:  2009-01-29       Impact factor: 49.962

8.  DNA transposons: nature and applications in genomics.

Authors:  Martín Muñoz-López; José L García-Pérez
Journal:  Curr Genomics       Date:  2010-04       Impact factor: 2.236

9.  Molecular paleontology of transposable elements in the Drosophila melanogaster genome.

Authors:  Vladimir V Kapitonov; Jerzy Jurka
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-12       Impact factor: 11.205

10.  An active DNA transposon family in rice.

Authors:  Ning Jiang; Zhirong Bao; Xiaoyu Zhang; Hirohiko Hirochika; Sean R Eddy; Susan R McCouch; Susan R Wessler
Journal:  Nature       Date:  2003-01-09       Impact factor: 49.962
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