Literature DB >> 27184599

Coming of age: ten years of next-generation sequencing technologies.

Sara Goodwin1, John D McPherson2, W Richard McCombie1.   

Abstract

Since the completion of the human genome project in 2003, extraordinary progress has been made in genome sequencing technologies, which has led to a decreased cost per megabase and an increase in the number and diversity of sequenced genomes. An astonishing complexity of genome architecture has been revealed, bringing these sequencing technologies to even greater advancements. Some approaches maximize the number of bases sequenced in the least amount of time, generating a wealth of data that can be used to understand increasingly complex phenotypes. Alternatively, other approaches now aim to sequence longer contiguous pieces of DNA, which are essential for resolving structurally complex regions. These and other strategies are providing researchers and clinicians a variety of tools to probe genomes in greater depth, leading to an enhanced understanding of how genome sequence variants underlie phenotype and disease.

Entities:  

Mesh:

Year:  2016        PMID: 27184599     DOI: 10.1038/nrg.2016.49

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  130 in total

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Journal:  Cold Spring Harb Symp Quant Biol       Date:  1953

2.  Assembly of large genomes using second-generation sequencing.

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Journal:  Genome Res       Date:  2010-05-27       Impact factor: 9.043

3.  Comprehensive high-throughput arrays for relative methylation (CHARM).

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Journal:  Genome Res       Date:  2008-03-03       Impact factor: 9.043

Review 4.  Next-generation sequencing platforms.

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Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2013       Impact factor: 10.745

5.  Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase.

Authors:  P M Holland; R D Abramson; R Watson; D H Gelfand
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-15       Impact factor: 11.205

6.  Nucleic acid amplification strategies for DNA microarray-based pathogen detection.

Authors:  Gary J Vora; Carolyn E Meador; David A Stenger; Joanne D Andreadis
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

Review 7.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

8.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

9.  Substantial biases in ultra-short read data sets from high-throughput DNA sequencing.

Authors:  Juliane C Dohm; Claudio Lottaz; Tatiana Borodina; Heinz Himmelbauer
Journal:  Nucleic Acids Res       Date:  2008-07-26       Impact factor: 16.971

10.  Analytical validation of the PAM50-based Prosigna Breast Cancer Prognostic Gene Signature Assay and nCounter Analysis System using formalin-fixed paraffin-embedded breast tumor specimens.

Authors:  Torsten Nielsen; Brett Wallden; Carl Schaper; Sean Ferree; Shuzhen Liu; Dongxia Gao; Garrett Barry; Naeem Dowidar; Malini Maysuria; James Storhoff
Journal:  BMC Cancer       Date:  2014-03-13       Impact factor: 4.430

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  968 in total

Review 1.  Single Cell RNA Sequencing in Atherosclerosis Research.

Authors:  Jesse W Williams; Holger Winkels; Christopher P Durant; Konstantin Zaitsev; Yanal Ghosheh; Klaus Ley
Journal:  Circ Res       Date:  2020-04-23       Impact factor: 17.367

Review 2.  Machine learning, the kidney, and genotype-phenotype analysis.

Authors:  Rachel S G Sealfon; Laura H Mariani; Matthias Kretzler; Olga G Troyanskaya
Journal:  Kidney Int       Date:  2020-04-01       Impact factor: 10.612

Review 3.  Transforming bacterial disease surveillance and investigation using whole-genome sequence to probe the trace.

Authors:  Biao Kan; Haijian Zhou; Pengcheng Du; Wen Zhang; Xin Lu; Tian Qin; Jianguo Xu
Journal:  Front Med       Date:  2018-01-09       Impact factor: 4.592

4.  CSAR-web: a web server of contig scaffolding using algebraic rearrangements.

Authors:  Kun-Tze Chen; Chin Lung Lu
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971

Review 5.  Genetic testing for kidney disease of unknown etiology.

Authors:  Thomas Hays; Emily E Groopman; Ali G Gharavi
Journal:  Kidney Int       Date:  2020-04-24       Impact factor: 10.612

Review 6.  Radiogenomics: Identification of Genomic Predictors for Radiation Toxicity.

Authors:  Barry S Rosenstein
Journal:  Semin Radiat Oncol       Date:  2017-10       Impact factor: 5.934

7.  Next generation sequencing data for use in risk assessment.

Authors:  B Alex Merrick
Journal:  Curr Opin Toxicol       Date:  2019-03-08

Review 8.  The 3PAs: An Update on the Association of Pheochromocytomas, Paragangliomas, and Pituitary Tumors.

Authors:  Paraskevi Xekouki; Ana Brennand; Ben Whitelaw; Karel Pacak; Constantine A Stratakis
Journal:  Horm Metab Res       Date:  2018-10-01       Impact factor: 2.936

9.  CBF2A-CBF4B genomic region copy numbers alongside the circadian clock play key regulatory mechanisms driving expression of FR-H2 CBFs.

Authors:  Taniya Dhillon; Kengo Morohashi; Eric J Stockinger
Journal:  Plant Mol Biol       Date:  2017-04-22       Impact factor: 4.076

Review 10.  A systems approach to infectious disease.

Authors:  Manon Eckhardt; Judd F Hultquist; Robyn M Kaake; Ruth Hüttenhain; Nevan J Krogan
Journal:  Nat Rev Genet       Date:  2020-02-14       Impact factor: 53.242

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