| Literature DB >> 33895935 |
Fatina W Dahadhah1, Mayyas Saleh Jaweesh2, Mazhar Salim Al Zoubi3, Manal Issam Abu Alarjah3, Mohamad Eid Hammadeh2, Houda Amor2.
Abstract
PURPOSE: The purpose of the present study was to determine the relationship between infertility and the polymorphisms of mitochondrial NADH dehydrogenase subunit 4 (MTND4) by spermatozoa analysis in fertile and subfertile men.Entities:
Keywords: MTND4; Male infertility; SNP; mtDNA
Mesh:
Substances:
Year: 2021 PMID: 33895935 PMCID: PMC8417158 DOI: 10.1007/s10815-021-02199-w
Source DB: PubMed Journal: J Assist Reprod Genet ISSN: 1058-0468 Impact factor: 3.412
Fig. 1Representative gel electrophoresis on 1% agarose gel of PCR products for the amplification of the MTND4 gene (1432 Bp). Lane M: DNA ladder (100–10,000 bp) (NE Biolabs, USA), lanes 1-18: PCR sample products, lane -ve: negative control. Electrophoresis was carried out at 100 V for 45 min. Gels were stained with red-safe stain and then DNA was visualized by ultra-violet (UV) transilluminator using Image LabTM Software (BIO-RAD, USA)
Comparison of the semen analysis parameters between the fertile and subfertile groups
| Parameter | Fertile ( | Subfertile ( | |
|---|---|---|---|
| Age | 34 (26–48) | 34 (26–48) | 0.247 |
| Sperm concentration (106 × 1ml) | 78.5 (17–185) | 28 (0.6–135) | <0.0001 |
| Total motility (PR + NP%) | 67.5 (44–90) | 48.5 (2–88) | < 0.0001 |
| Morphologically normal spermatozoa (%) | 24.5 (20–30) | 15 (0–28) | < 0.0001 |
Genotype frequency of MTND4 polymorphisms between subfertile and fertile groups
| SNP | Contig position | Protein position | Genotype | Subfertile ( | Fertile ( | |
|---|---|---|---|---|---|---|
rs2853495 G>A | 11719 | Gly320Gly | GG | 25 | 8 | |
| GA | 0 | 0 | ||||
| AA | 43 | 36 | ||||
rs2857284 T>C | 10873 | Pro38Pro | TT | 49 | 35 | 0.0995 |
| TC | 2 | 4 | ||||
| CC | 17 | 5 | ||||
rs2853496 G>A,C | 11914 | Thr385Thr | GG | 56 | 40 | 0.597 |
| GA | 3 | 1 | ||||
| AC | 1 | 0 | ||||
| AA | 8 | 3 | ||||
rs2853497 G>A | 12007 | .Trp416.Trp | GG | 63 | 39 | 0.598 |
| GA | 3 | 4 | ||||
| AA | 2 | 1 | ||||
rs3087901 T>A,C,G | 11944 | Leu395Leu | TT | 63 | 42 | 0.548 |
| TC | 0 | 0 | ||||
| CC | 5 | 2 | ||||
rs2853493 A>G | 11467 | Leu236Leu | AA | 66 | 40 | 0.158 |
| AG | 0 | 0 | ||||
| GG | 2 | 4 | ||||
rs2853490 G>A | 11176 | Gln139Gln | GG | 66 | 40 | 0.183 |
| GA | 0 | 2 | ||||
| AA | 2 | 2 | ||||
rs3088053 A>C,G | 11812 | Leu351Leu | AA | 64 | 42 | 0.758 |
| AG | 0 | 0 | ||||
| GG | 4 | 2 | ||||
rs2853491 C>T | 11335 | Asn192Asn | CC | 66 | 42 | 0.655 |
| CT | 0 | 0 | ||||
| TT | 2 | 2 | ||||
rs2857285 T>C,G | 10915 | Cys52Cys | TT | 66 | 43 | 0.241 |
| TC | 0 | 1 | ||||
| CC | 2 | 0 | ||||
rs28358282 T>C | 10810 | Leu17Leu | TT | 67 | 42 | 0.434 |
| TC | 1 | 1 | ||||
| CC | 0 | 1 | ||||
rs28594904 G>A,C | 11016 | Ser86Asn Ser86Thr | GG | 67 | 42 | 0.434 |
| GA | 0 | 1 | ||||
| AA | 1 | 1 | ||||
rs28669780 C>A | 11603 | Leu282Met | CC | 67 | 42 | 0.434 |
| CA | 0 | 1 | ||||
| AA | 1 | 1 | ||||
rs28415973 T>C | 12091 | Ile444Ile | TT | 67 | 42 | 0.434 |
| TC | 0 | 1 | ||||
| CC | 1 | 1 | ||||
rs28471078 T>C | 11722 | Leu321Leu | TT | 67 | 43 | 0.754 |
| TC | 0 | 0 | ||||
| CC | 1 | 1 | ||||
rs55714831 C>T | 11332 | Ala191Ala | CC | 67 | 43 | 0.754 |
| CT | 1 | 1 | ||||
| TT | 0 | 0 | ||||
rs28358283 A>G | 10819 | Lys20Lys | AA | 67 | 44 | 0.419 |
| AG | 0 | 0 | ||||
| GG | 1 | 0 | ||||
rs75214962 C>T | 11197 | Gly146Gly | CC | 67 | 44 | 0.419 |
| CT | 0 | 0 | ||||
| TT | 1 | 0 | ||||
rs28529320 T>C | 11485 | Gly242Gly | TT | 68 | 43 | 0.211 |
| TC | 0 | 0 | ||||
| CC | 0 | 1 | ||||
Rs2853494 A>G | 11641 | Met294Met | AA | 68 | 43 | 0.211 |
| AG | 0 | 0 | ||||
| GG | 0 | 1 | ||||
rs28609979 T>C | 11365 | Ala202Ala | TT | 68 | 44 | - |
| TC | 0 | 0 | ||||
| CC | 0 | 0 | ||||
rs28358286 C>T | 11674 | Thr305Thr | CC | 68 | 43 | 0.211 |
| CT | 0 | 0 | ||||
| CC | 0 | 1 | ||||
rs28359168 A>G | 11947 | Thr396Thr | AA | 68 | 43 | 0.211 |
| AG | 0 | 0 | ||||
| GG | 0 | 1 | ||||
rs28384199 C>A,G | 11777 | Arg340Ser Arg340Gly | CC | 67 | 44 | 0.419 |
| CG | 0 | 0 | ||||
| GG | 1 | 0 | ||||
rs869096886 A>G | 11251 | Leu164Leu | AA | 52 | 26 | 0.147 |
| AG | 1 | 1 | ||||
| GG | 15 | 17 |
SNP single-nucleotide polymorphism
The significant results are in bold
Allele frequency of MTND4 polymorphisms between subfertile and fertile groups
| SNP | Contig position | Protein position | Allele | Subfertile ( | Fertile ( | OR (95% CI)* | |
|---|---|---|---|---|---|---|---|
rs2853495 G>A | 11719 | Gly320Gly | G | 50 | 16 | 2.616 (1.374–4.983) | |
| A | 86 | 72 | |||||
rs2857284 T>C | 10873 | Pro38Pro | T | 100 | 74 | 0.5255 (0.264–1.044) | 0.071 |
| C | 36 | 14 | |||||
rs2853496 G>A,C | 11914 | Thr385Thr | G | 115 | 81 | 0.496 (0.200–1.230) | 0.145 |
| A | 20 | 7 | |||||
rs2853497 G>A | 12007 | Trp416Trp | G | 129 | 82 | 1.348 (0.437–4.155) | 0.771 |
| A | 7 | 6 | |||||
rs3087901 T>A,C,G | 11944 | Leu395Leu | T | 126 | 84 | 0.6000 (0.18–1.97) | 0.573 |
| C | 10 | 4 | |||||
rs2853493 A>G | 11467 | Leu236Leu | A | 132 | 80 | 3.300 (0.962–11.31) | 0.066 |
| G | 4 | 8 | |||||
rs2853490 G>A | 11176 | Gln139Gln | G | 132 | 82 | 2.415 (0.661–8.817) | 0.196 |
| A | 4 | 6 | |||||
rs3088053 A>C,G | 11812 | Leu351Leu | A | 128 | 84 | 0.761 (0.222–2.611) | 0.768 |
| G | 8 | 4 | |||||
rs2853491 C>T | 11335 | Asn192Asn | C | 132 | 84 | 1.571 (0.382–6.456) | 0.714 |
| T | 4 | 4 | |||||
| rs2857285 T>C,G | 10915 | Cys52Cys | T | 132 | 87 | 0.379 (0.041–3.453) | 0.650 |
| C | 4 | 1 | |||||
| rs28358282 T>C | 10810 | Leu17Leu | T | 135 | 85 | 4.765 (0.487–46.58) | 0.302 |
| C | 1 | 3 | |||||
| rs28594904 G>A,C | 11016 | Ser86Asn Ser86Thr | G | 134 | 85 | 2.365 (0.386–14.45) | 0.383 |
| A | 2 | 3 | |||||
| rs28669780 C>A | 11603 | Leu282Met | C | 134 | 85 | 2.365 (0.386–14.45) | 0.383 |
| A | 2 | 3 | |||||
rs28415973 T>C | 12091 | Ile444Ile | T | 134 | 85 | 2.365 (0.386–14.45) | 0.383 |
| C | 2 | 3 | |||||
rs28471078 T>C | 11722 | Leu321Leu | T | 134 | 86 | 1.558 (0.215–11.27) | 0.646 |
| C | 2 | 2 | |||||
| rs55714831 C>T | 11332 | Ala191Ala | C | 135 | 87 | 1.552 (0.095–25.15) | 1.000 |
| T | 1 | 1 | |||||
| rs28358283 A>G | 10819 | Lys20Lys | A | 134 | 88 | 0.304 (0.014–6.411) | 0.520 |
| G | 2 | 0 | |||||
| rs75214962 C>T | 11197 | Gly146Gly | C | 134 | 88 | 0.304 (0.014–6.411) | 0.520 |
| T | 2 | 0 | |||||
rs28529320 T>C | 11485 | Gly242Gly | T | 136 | 86 | 7.890 (0.37–166.44) | 0.153 |
| C | 0 | 2 | |||||
rs2853494 A>G | 11641 | Met294Met | A | 136 | 86 | 7.890 (0.37–166.44) | 0.153 |
| G | 0 | 2 | |||||
| rs28609979 T>C | 11365 | Ala202Ala | T | 136 | 88 | - | - |
| C | 0 | 0 | |||||
rs28358286 C>T | 11674 | Thr305Thr | C | 136 | 86 | 7.890 (0.37–166.44) | 0.153 |
| T | 0 | 2 | |||||
rs28359168 A>G | 11947 | Thr396Thr | A | 136 | 86 | 7.890 (0.37–166.44) | 0.153 |
| G | 0 | 2 | |||||
rs28384199 C>A,G | 11777 | Arg340Ser Arg340Gly | C | 134 | 88 | 0.304 (0.01–6.41) | 0.520 |
| G | 2 | 0 | |||||
| rs869096886 A>G | 11251 | Leu164Leu | A | 105 | 53 | 2.237 (1.24–4.01) | |
| G | 31 | 35 |
SNP single-nucleotide polymorphism, OR odds ratio, CI confidence interval
The significant results are in bold