Literature DB >> 33883744

Gasdermin D pore structure reveals preferential release of mature interleukin-1.

Shiyu Xia1,2, Zhibin Zhang1,3, Venkat Giri Magupalli1,2, Juan Lorenzo Pablo4,5, Ying Dong1,2, Setu M Vora1,2, Longfei Wang1,2, Tian-Min Fu1,2,6,7, Matthew P Jacobson8, Anna Greka4,5, Judy Lieberman1,3, Jianbin Ruan9,10,11, Hao Wu12,13.   

Abstract

As organelles of the innate immune system, inflammasomes activate caspase-1 and other inflammatory caspases that cleave gasdermin D (GSDMD). Caspase-1 also cleaves inactive precursors of the interleukin (IL)-1 family to generate mature cytokines such as IL-1β and IL-18. Cleaved GSDMD forms transmembrane pores to enable the release of IL-1 and to drive cell lysis through pyroptosis1-9. Here we report cryo-electron microscopy structures of the pore and the prepore of GSDMD. These structures reveal the different conformations of the two states, as well as extensive membrane-binding elements including a hydrophobic anchor and three positively charged patches. The GSDMD pore conduit is predominantly negatively charged. By contrast, IL-1 precursors have an acidic domain that is proteolytically removed by caspase-110. When permeabilized by GSDMD pores, unlysed liposomes release positively charged and neutral cargoes faster than negatively charged cargoes of similar sizes, and the pores favour the passage of IL-1β and IL-18 over that of their precursors. Consistent with these findings, living-but not pyroptotic-macrophages preferentially release mature IL-1β upon perforation by GSDMD. Mutation of the acidic residues of GSDMD compromises this preference, hindering intracellular retention of the precursor and secretion of the mature cytokine. The GSDMD pore therefore mediates IL-1 release by electrostatic filtering, which suggests the importance of charge in addition to size in the transport of cargoes across this large channel.

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Year:  2021        PMID: 33883744      PMCID: PMC8588876          DOI: 10.1038/s41586-021-03478-3

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  41 in total

1.  The Gasdermin-D pore acts as a conduit for IL-1β secretion in mice.

Authors:  Rosalie Heilig; Mathias S Dick; Lorenzo Sborgi; Etienne Meunier; Sebastian Hiller; Petr Broz
Journal:  Eur J Immunol       Date:  2018-01-15       Impact factor: 5.532

2.  Cleavage of GSDMD by inflammatory caspases determines pyroptotic cell death.

Authors:  Jianjin Shi; Yue Zhao; Kun Wang; Xuyan Shi; Yue Wang; Huanwei Huang; Yinghua Zhuang; Tao Cai; Fengchao Wang; Feng Shao
Journal:  Nature       Date:  2015-09-16       Impact factor: 49.962

3.  Caspase-11 cleaves gasdermin D for non-canonical inflammasome signalling.

Authors:  Nobuhiko Kayagaki; Irma B Stowe; Bettina L Lee; Karen O'Rourke; Keith Anderson; Søren Warming; Trinna Cuellar; Benjamin Haley; Merone Roose-Girma; Qui T Phung; Peter S Liu; Jennie R Lill; Hong Li; Jiansheng Wu; Sarah Kummerfeld; Juan Zhang; Wyne P Lee; Scott J Snipas; Guy S Salvesen; Lucy X Morris; Linda Fitzgerald; Yafei Zhang; Edward M Bertram; Christopher C Goodnow; Vishva M Dixit
Journal:  Nature       Date:  2015-09-16       Impact factor: 49.962

4.  NINJ1 mediates plasma membrane rupture during lytic cell death.

Authors:  Nobuhiko Kayagaki; Opher S Kornfeld; Bettina L Lee; Irma B Stowe; Karen O'Rourke; Qingling Li; Wendy Sandoval; Donghong Yan; Jing Kang; Min Xu; Juan Zhang; Wyne P Lee; Brent S McKenzie; Gözde Ulas; Jian Payandeh; Merone Roose-Girma; Zora Modrusan; Rohit Reja; Meredith Sagolla; Joshua D Webster; Vicky Cho; T Daniel Andrews; Lucy X Morris; Lisa A Miosge; Christopher C Goodnow; Edward M Bertram; Vishva M Dixit
Journal:  Nature       Date:  2021-01-20       Impact factor: 49.962

5.  GsdmD p30 elicited by caspase-11 during pyroptosis forms pores in membranes.

Authors:  Robin A Aglietti; Alberto Estevez; Aaron Gupta; Monica Gonzalez Ramirez; Peter S Liu; Nobuhiko Kayagaki; Claudio Ciferri; Vishva M Dixit; Erin C Dueber
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-23       Impact factor: 11.205

6.  Interleukin-1β Maturation Triggers Its Relocation to the Plasma Membrane for Gasdermin-D-Dependent and -Independent Secretion.

Authors:  Mercedes Monteleone; Amanda C Stanley; Kaiwen W Chen; Darren L Brown; Jelena S Bezbradica; Jessica B von Pein; Caroline L Holley; Dave Boucher; Melanie R Shakespear; Ronan Kapetanovic; Verena Rolfes; Matthew J Sweet; Jennifer L Stow; Kate Schroder
Journal:  Cell Rep       Date:  2018-08-07       Impact factor: 9.423

7.  Pore-forming activity and structural autoinhibition of the gasdermin family.

Authors:  Jingjin Ding; Kun Wang; Wang Liu; Yang She; Qi Sun; Jianjin Shi; Hanzi Sun; Da-Cheng Wang; Feng Shao
Journal:  Nature       Date:  2016-06-08       Impact factor: 49.962

8.  The Pore-Forming Protein Gasdermin D Regulates Interleukin-1 Secretion from Living Macrophages.

Authors:  Charles L Evavold; Jianbin Ruan; Yunhao Tan; Shiyu Xia; Hao Wu; Jonathan C Kagan
Journal:  Immunity       Date:  2017-11-28       Impact factor: 31.745

9.  Inflammasome-activated gasdermin D causes pyroptosis by forming membrane pores.

Authors:  Xing Liu; Zhibin Zhang; Jianbin Ruan; Youdong Pan; Venkat Giri Magupalli; Hao Wu; Judy Lieberman
Journal:  Nature       Date:  2016-07-07       Impact factor: 49.962

10.  GSDMD membrane pore formation constitutes the mechanism of pyroptotic cell death.

Authors:  Lorenzo Sborgi; Sebastian Rühl; Estefania Mulvihill; Joka Pipercevic; Rosalie Heilig; Henning Stahlberg; Christopher J Farady; Daniel J Müller; Petr Broz; Sebastian Hiller
Journal:  EMBO J       Date:  2016-07-14       Impact factor: 11.598

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  70 in total

Review 1.  Gasdermin Pore Forming Activities that Promote Inflammation from Living and Dead Cells.

Authors:  Anh Cao; Jonathan C Kagan
Journal:  J Mol Biol       Date:  2021-12-29       Impact factor: 5.469

Review 2.  Enzymatic noncovalent synthesis of peptide assemblies generates multimolecular crowding in cells for biomedical applications.

Authors:  Meihui Yi; Weiyi Tan; Jiaqi Guo; Bing Xu
Journal:  Chem Commun (Camb)       Date:  2021-12-03       Impact factor: 6.222

3.  Ragulator-Rag and ROS TORment gasdermin D pore formation.

Authors:  Venkat Giri Magupalli; Pietro Fontana; Hao Wu
Journal:  Trends Immunol       Date:  2021-10-15       Impact factor: 16.687

Review 4.  Mechanistic Insights into Gasdermin Pore Formation and Regulation in Pyroptosis.

Authors:  Chengliang Wang; Jianbin Ruan
Journal:  J Mol Biol       Date:  2021-10-08       Impact factor: 5.469

Review 5.  Pyroptosis-Induced Inflammation and Tissue Damage.

Authors:  Yinan Wei; Ling Yang; Ankit Pandeya; Jian Cui; Yan Zhang; Zhenyu Li
Journal:  J Mol Biol       Date:  2021-10-13       Impact factor: 5.469

Review 6.  Mechanisms and Consequences of Noncanonical Inflammasome-Mediated Pyroptosis.

Authors:  Skylar S Wright; Swathy O Vasudevan; Vijay A Rathinam
Journal:  J Mol Biol       Date:  2021-09-16       Impact factor: 5.469

Review 7.  Lipid-protein interactions regulating the canonical and the non-canonical NLRP3 inflammasome.

Authors:  Malvina Pizzuto; Pablo Pelegrin; Jean-Marie Ruysschaert
Journal:  Prog Lipid Res       Date:  2022-07-25       Impact factor: 14.673

Review 8.  Deubiquitinases in cell death and inflammation.

Authors:  Kim Newton; Alexander D Gitlin
Journal:  Biochem J       Date:  2022-05-27       Impact factor: 3.766

Review 9.  Pyroptosis and Its Role in Autoimmune Disease: A Potential Therapeutic Target.

Authors:  Ruixuan You; Xinglan He; Zhuotong Zeng; Yi Zhan; Yangfan Xiao; Rong Xiao
Journal:  Front Immunol       Date:  2022-05-25       Impact factor: 8.786

Review 10.  Chemical Modulation of Gasdermin-Mediated Pyroptosis and Therapeutic Potential.

Authors:  Christopher B Ryder; Hannah C Kondolf; Meghan E O'Keefe; Bowen Zhou; Derek W Abbott
Journal:  J Mol Biol       Date:  2021-08-03       Impact factor: 5.469

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