Literature DB >> 33881574

Single-strand template repair: key insights to increase the efficiency of gene editing.

Danielle N Gallagher1, James E Haber2.   

Abstract

DNA double-strand breaks (DSBs) pose a serious hazard for the stability of the genome. CRISPR-Cas9-mediated gene editing intentionally creates a site-specific DSB to modify the genomic sequence, typically from an introduced single-stranded DNA donor. However, unlike typical forms of homologous recombination, single-strand template repair (SSTR) is Rad51-independent. Moreover, this pathway is distinct from other previously characterized Rad51-independent processes. Here, we briefly review the work characterizing this pathway, and how these findings can be used to guide and improve current gene editing strategies.
© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  CRISPR; DNA double-strand break repair; Gene editing; Single-strand template repair

Mesh:

Substances:

Year:  2021        PMID: 33881574     DOI: 10.1007/s00294-021-01186-z

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  42 in total

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Authors:  James E Haber
Journal:  Annu Rev Genet       Date:  2016-10-03       Impact factor: 16.830

2.  Increased mutagenesis and unique mutation signature associated with mitotic gene conversion.

Authors:  Wade M Hicks; Minlee Kim; James E Haber
Journal:  Science       Date:  2010-07-02       Impact factor: 47.728

3.  Mitotic crossovers between diverged sequences are regulated by mismatch repair proteins in Saccaromyces cerevisiae.

Authors:  A Datta; A Adjiri; L New; G F Crouse; S Jinks Robertson
Journal:  Mol Cell Biol       Date:  1996-03       Impact factor: 4.272

4.  Rapid kinetics of mismatch repair of heteroduplex DNA that is formed during recombination in yeast.

Authors:  J E Haber; B L Ray; J M Kolb; C I White
Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-15       Impact factor: 11.205

5.  A role for REV3 in mutagenesis during double-strand break repair in Saccharomyces cerevisiae.

Authors:  S L Holbeck; J N Strathern
Journal:  Genetics       Date:  1997-11       Impact factor: 4.562

6.  Removal of nonhomologous DNA ends in double-strand break recombination: the role of the yeast ultraviolet repair gene RAD1.

Authors:  J Fishman-Lobell; J E Haber
Journal:  Science       Date:  1992-10-16       Impact factor: 47.728

7.  The CDK regulates repair of double-strand breaks by homologous recombination during the cell cycle.

Authors:  Yael Aylon; Batia Liefshitz; Martin Kupiec
Journal:  EMBO J       Date:  2004-11-18       Impact factor: 11.598

8.  DNA mismatch repair and oligonucleotide end-protection promote base-pair substitution distal from a CRISPR/Cas9-induced DNA break.

Authors:  Tim Harmsen; Sjoerd Klaasen; Henri van de Vrugt; Hein Te Riele
Journal:  Nucleic Acids Res       Date:  2018-04-06       Impact factor: 16.971

9.  CtIP fusion to Cas9 enhances transgene integration by homology-dependent repair.

Authors:  M Charpentier; A H Y Khedher; S Menoret; A Brion; K Lamribet; E Dardillac; C Boix; L Perrouault; L Tesson; S Geny; A De Cian; J M Itier; I Anegon; B Lopez; C Giovannangeli; J P Concordet
Journal:  Nat Commun       Date:  2018-03-19       Impact factor: 14.919

10.  A Rad51-independent pathway promotes single-strand template repair in gene editing.

Authors:  Danielle N Gallagher; Nhung Pham; Annie M Tsai; Nicolas V Janto; Jihyun Choi; Grzegorz Ira; James E Haber
Journal:  PLoS Genet       Date:  2020-10-15       Impact factor: 5.917

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  2 in total

1.  Generation of NPHP1 knockout human pluripotent stem cells by a practical biallelic gene deletion strategy using CRISPR/Cas9 and ssODN.

Authors:  Yuta Nakano; Koichiro Susa; Tomoki Yanagi; Yuichi Hiraoka; Takefumi Suzuki; Takayasu Mori; Fumiaki Ando; Shintaro Mandai; Tamami Fujiki; Tatemitsu Rai; Shinichi Uchida; Eisei Sohara
Journal:  In Vitro Cell Dev Biol Anim       Date:  2022-02-14       Impact factor: 2.416

2.  An update on precision genome editing by homology-directed repair in plants.

Authors:  Jilin Chen; Shaoya Li; Yubing He; Jingying Li; Lanqin Xia
Journal:  Plant Physiol       Date:  2022-03-28       Impact factor: 8.340

  2 in total

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