Literature DB >> 33879355

Towards a Human Cell Atlas: Taking Notes from the Past.

Rik G H Lindeboom1, Aviv Regev2, Sarah A Teichmann3.   

Abstract

Comprehensively characterizing the cellular composition and organization of tissues has been a long-term scientific challenge that has limited our ability to study fundamental and clinical aspects of human physiology. The Human Cell Atlas (HCA) is a global collaborative effort to create a reference map of all human cells as a basis for both understanding human health and diagnosing, monitoring, and treating disease. Many aspects of the HCA are analogous to the Human Genome Project (HGP), whose completion presents a major milestone in modern biology. To commemorate the HGP's 20-year anniversary of completion, we discuss the launch of the HCA in light of the HGP, and highlight recent progress by the HCA consortium.
Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Human Cell Atlas; Human Genome Project; single cell

Year:  2021        PMID: 33879355     DOI: 10.1016/j.tig.2021.03.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  14 in total

1.  Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches.

Authors:  Martin Guilliams; Johnny Bonnardel; Birthe Haest; Bart Vanderborght; Camille Wagner; Anneleen Remmerie; Anna Bujko; Liesbet Martens; Tinne Thoné; Robin Browaeys; Federico F De Ponti; Bavo Vanneste; Christian Zwicker; Freya R Svedberg; Tineke Vanhalewyn; Amanda Gonçalves; Saskia Lippens; Bert Devriendt; Eric Cox; Giuliano Ferrero; Valerie Wittamer; Andy Willaert; Suzanne J F Kaptein; Johan Neyts; Kai Dallmeier; Peter Geldhof; Stijn Casaert; Bart Deplancke; Peter Ten Dijke; Anne Hoorens; Aude Vanlander; Frederik Berrevoet; Yves Van Nieuwenhove; Yvan Saeys; Wouter Saelens; Hans Van Vlierberghe; Lindsey Devisscher; Charlotte L Scott
Journal:  Cell       Date:  2022-01-11       Impact factor: 41.582

Review 2.  What is a cell type and how to define it?

Authors:  Hongkui Zeng
Journal:  Cell       Date:  2022-07-21       Impact factor: 66.850

Review 3.  A Roadmap for the Human Oral and Craniofacial Cell Atlas.

Authors:  A J Caetano; I Sequeira; K M Byrd
Journal:  J Dent Res       Date:  2022-10       Impact factor: 8.924

Review 4.  Single-cell atlases: shared and tissue-specific cell types across human organs.

Authors:  Rasa Elmentaite; Cecilia Domínguez Conde; Lu Yang; Sarah A Teichmann
Journal:  Nat Rev Genet       Date:  2022-02-25       Impact factor: 59.581

5.  Integration of Single-Cell RNA- and CAGE-seq Reveals Tooth-Enriched Genes.

Authors:  Y Chiba; K Yoshizaki; T Tian; K Miyazaki; D Martin; K Saito; A Yamada; S Fukumoto
Journal:  J Dent Res       Date:  2021-11-20       Impact factor: 8.924

Review 6.  Histone H2A variants: Diversifying chromatin to ensure genome integrity.

Authors:  Philipp Oberdoerffer; Kyle M Miller
Journal:  Semin Cell Dev Biol       Date:  2022-03-21       Impact factor: 7.499

7.  CancerSCEM: a database of single-cell expression map across various human cancers.

Authors:  Jingyao Zeng; Yadong Zhang; Yunfei Shang; Jialin Mai; Shuo Shi; Mingming Lu; Congfan Bu; Zhewen Zhang; Zaichao Zhang; Yang Li; Zhenglin Du; Jingfa Xiao
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

8.  Envisioning the next human genome reference.

Authors:  Monkol Lek; Elaine R Mardis
Journal:  Dis Model Mech       Date:  2021-12-22       Impact factor: 5.758

Review 9.  Redefining intestinal immunity with single-cell transcriptomics.

Authors:  Kylie Renee James; Rasa Elmentaite; Sarah Amalia Teichmann; Georgina Louise Hold
Journal:  Mucosal Immunol       Date:  2021-11-30       Impact factor: 8.701

10.  Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications.

Authors:  Alessandro Rigano; Shannon Ehmsen; Serkan Utku Öztürk; Joel Ryan; Alexander Balashov; Mathias Hammer; Koray Kirli; Ulrike Boehm; Claire M Brown; Karl Bellve; James J Chambers; Andrea Cosolo; Robert A Coleman; Orestis Faklaris; Kevin E Fogarty; Thomas Guilbert; Anna B Hamacher; Michelle S Itano; Daniel P Keeley; Susanne Kunis; Judith Lacoste; Alex Laude; Willa Y Ma; Marco Marcello; Paula Montero-Llopis; Glyn Nelson; Roland Nitschke; Jaime A Pimentel; Stefanie Weidtkamp-Peters; Peter J Park; Burak H Alver; David Grunwald; Caterina Strambio-De-Castillia
Journal:  Nat Methods       Date:  2021-12-03       Impact factor: 28.547

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