Literature DB >> 36154725

A Roadmap for the Human Oral and Craniofacial Cell Atlas.

A J Caetano1, I Sequeira2, K M Byrd3.   

Abstract

Oral and craniofacial tissues are uniquely adapted for continuous and intricate functioning, including breathing, feeding, and communication. To achieve these vital processes, this complex is supported by incredible tissue diversity, variously composed of epithelia, vessels, cartilage, bone, teeth, ligaments, and muscles, as well as mesenchymal, adipose, and peripheral nervous tissue. Recent single cell and spatial multiomics assays-specifically, genomics, epigenomics, transcriptomics, proteomics, and metabolomics-have annotated known and new cell types and cell states in human tissues and animal models, but these concepts remain limitedly explored in the human postnatal oral and craniofacial complex. Here, we highlight the collaborative and coordinated efforts of the newly established Oral and Craniofacial Bionetwork as part of the Human Cell Atlas, which aims to leverage single cell and spatial multiomics approaches to first understand the cellular and molecular makeup of human oral and craniofacial tissues in health and to then address common and rare diseases. These powerful assays have already revealed the cell types that support oral tissues, and they will unravel cell types and molecular networks utilized across development, maintenance, and aging as well as those affected in diseases of the craniofacial complex. This level of integration and cell annotation with partner laboratories across the globe will be critical for understanding how multiple variables, such as age, sex, race, and ancestry, influence these oral and craniofacial niches. Here, we 1) highlight these recent collaborative efforts to employ new single cell and spatial approaches to resolve our collective biology at a higher resolution in health and disease, 2) discuss the vision behind the Oral and Craniofacial Bionetwork, 3) outline the stakeholders who contribute to and will benefit from this network, and 4) outline directions for creating the first Human Oral and Craniofacial Cell Atlas.

Entities:  

Keywords:  Human Cell Atlas; bone; craniofacial; multiomics; musculoskeletal; oral mucosa; palate; periodontium; saliva; single cell genomics; spatial biology; tongue

Mesh:

Year:  2022        PMID: 36154725      PMCID: PMC9516614          DOI: 10.1177/00220345221110768

Source DB:  PubMed          Journal:  J Dent Res        ISSN: 0022-0345            Impact factor:   8.924


  53 in total

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Authors:  J Eberwine; H Yeh; K Miyashiro; Y Cao; S Nair; R Finnell; M Zettel; P Coleman
Journal:  Proc Natl Acad Sci U S A       Date:  1992-04-01       Impact factor: 11.205

2.  Gene expression cartography.

Authors:  Mor Nitzan; Nikos Karaiskos; Nir Friedman; Nikolaus Rajewsky
Journal:  Nature       Date:  2019-11-20       Impact factor: 49.962

3.  A cellular census of human lungs identifies novel cell states in health and in asthma.

Authors:  Felipe A Vieira Braga; Gozde Kar; Marijn Berg; Orestes A Carpaij; Krzysztof Polanski; Lukas M Simon; Sharon Brouwer; Tomás Gomes; Laura Hesse; Jian Jiang; Eirini S Fasouli; Mirjana Efremova; Roser Vento-Tormo; Carlos Talavera-López; Marnix R Jonker; Karen Affleck; Subarna Palit; Paulina M Strzelecka; Helen V Firth; Krishnaa T Mahbubani; Ana Cvejic; Kerstin B Meyer; Kourosh Saeb-Parsy; Marjan Luinge; Corry-Anke Brandsma; Wim Timens; Ilias Angelidis; Maximilian Strunz; Gerard H Koppelman; Antoon J van Oosterhout; Herbert B Schiller; Fabian J Theis; Maarten van den Berge; Martijn C Nawijn; Sarah A Teichmann
Journal:  Nat Med       Date:  2019-06-17       Impact factor: 53.440

4.  Transcriptomic Mapping of Human Parotid Gland at Single-Cell Resolution.

Authors:  M Chen; W Lin; J Gan; W Lu; M Wang; X Wang; J Yi; Z Zhao
Journal:  J Dent Res       Date:  2022-02-26       Impact factor: 8.924

5.  Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine.

Authors:  Nikolaus Rajewsky; Geneviève Almouzni; Stanislaw A Gorski; Stein Aerts; Ido Amit; Michela G Bertero; Christoph Bock; Annelien L Bredenoord; Giacomo Cavalli; Susanna Chiocca; Hans Clevers; Bart De Strooper; Angelika Eggert; Jan Ellenberg; Xosé M Fernández; Marek Figlerowicz; Susan M Gasser; Norbert Hubner; Jørgen Kjems; Jürgen A Knoblich; Grietje Krabbe; Peter Lichter; Sten Linnarsson; Jean-Christophe Marine; John C Marioni; Marc A Marti-Renom; Mihai G Netea; Dörthe Nickel; Marcelo Nollmann; Halina R Novak; Helen Parkinson; Stefano Piccolo; Inês Pinheiro; Ana Pombo; Christian Popp; Wolf Reik; Sergio Roman-Roman; Philip Rosenstiel; Joachim L Schultze; Oliver Stegle; Amos Tanay; Giuseppe Testa; Dimitris Thanos; Fabian J Theis; Maria-Elena Torres-Padilla; Alfonso Valencia; Céline Vallot; Alexander van Oudenaarden; Marie Vidal; Thierry Voet
Journal:  Nature       Date:  2021-04       Impact factor: 49.962

6.  Genetic and scRNA-seq Analysis Reveals Distinct Cell Populations that Contribute to Salivary Gland Development and Maintenance.

Authors:  Eun-Ah Christine Song; Sangwon Min; Akinsola Oyelakin; Kirsten Smalley; Jonathan E Bard; Lan Liao; Jianming Xu; Rose-Anne Romano
Journal:  Sci Rep       Date:  2018-09-19       Impact factor: 4.379

7.  A human liver cell atlas reveals heterogeneity and epithelial progenitors.

Authors:  Antonio Saviano; Nadim Aizarani; Laurent Mailly; Sarah Durand; Josip S Herman; Patrick Pessaux; Thomas F Baumert; Dominic Grün
Journal:  Nature       Date:  2019-07-10       Impact factor: 49.962

8.  Single-Cell RNA-Sequencing From Mouse Incisor Reveals Dental Epithelial Cell-Type Specific Genes.

Authors:  Yuta Chiba; Kan Saito; Daniel Martin; Erich T Boger; Craig Rhodes; Keigo Yoshizaki; Takashi Nakamura; Aya Yamada; Robert J Morell; Yoshihiko Yamada; Satoshi Fukumoto
Journal:  Front Cell Dev Biol       Date:  2020-09-01

9.  Giotto: a toolbox for integrative analysis and visualization of spatial expression data.

Authors:  Ruben Dries; Qian Zhu; Rui Dong; Chee-Huat Linus Eng; Huipeng Li; Kan Liu; Yuntian Fu; Tianxiao Zhao; Arpan Sarkar; Feng Bao; Rani E George; Nico Pierson; Long Cai; Guo-Cheng Yuan
Journal:  Genome Biol       Date:  2021-03-08       Impact factor: 17.906

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  1 in total

1.  Data-Driven Dental, Oral, and Craniofacial Analytics: Here to Stay.

Authors:  F Schwendicke; M L Marazita
Journal:  J Dent Res       Date:  2022-10       Impact factor: 8.924

  1 in total

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