Literature DB >> 26240515

Markov Chain Monte Carlo from Lagrangian Dynamics.

Shiwei Lan1, Vasileios Stathopoulos2, Babak Shahbaba1, Mark Girolami2.   

Abstract

Hamiltonian Monte Carlo (HMC) improves the computational e ciency of the Metropolis-Hastings algorithm by reducing its random walk behavior. Riemannian HMC (RHMC) further improves the performance of HMC by exploiting the geometric properties of the parameter space. However, the geometric integrator used for RHMC involves implicit equations that require fixed-point iterations. In some cases, the computational overhead for solving implicit equations undermines RHMC's benefits. In an attempt to circumvent this problem, we propose an explicit integrator that replaces the momentum variable in RHMC by velocity. We show that the resulting transformation is equivalent to transforming Riemannian Hamiltonian dynamics to Lagrangian dynamics. Experimental results suggests that our method improves RHMC's overall computational e ciency in the cases considered. All computer programs and data sets are available online (http://www.ics.uci.edu/~babaks/Site/Codes.html) in order to allow replication of the results reported in this paper.

Entities:  

Keywords:  Explicit Integrator; Hamiltonian Monte Carlo; Lagrangian Dynamics; Riemannian Manifold

Year:  2015        PMID: 26240515      PMCID: PMC4521456          DOI: 10.1080/10618600.2014.902764

Source DB:  PubMed          Journal:  J Comput Graph Stat        ISSN: 1061-8600            Impact factor:   2.302


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