Literature DB >> 33864415

Macromolecular regulators have matching effects on the phase equilibrium and interfacial tension of biomolecular condensates.

Konstantinos Mazarakos1, Huan-Xiang Zhou1,2.   

Abstract

The interfacial tension of phase-separated biomolecular condensates affects their fusion and multiphase organization, and yet how this important property depends on the composition and interactions of the constituent macromolecules is poorly understood. Here we use molecular dynamics simulations to determine the interfacial tension and phase equilibrium of model condensate-forming systems. The model systems consist of binary mixtures of Lennard-Jones particles or chains of such particles. We refer to the two components as drivers and regulators; the former has stronger self-interactions and hence a higher critical temperature (Tc ) for phase separation. In previous work, we have shown that, depending on the relative strengths of driver-regulator and driver-driver interactions, regulators can either promote or suppress phase separation (i.e., increase or decrease Tc ). Here we find that the effects of regulators on Tc quantitatively match the effects on interfacial tension (γ). This important finding means that, when a condensate-forming system experiences a change in macromolecular composition or a change in intermolecular interactions (e.g., by mutation or posttranslational modification, or by variation in solvent conditions such as temperature, pH, or salt), the resulting change in Tc can be used to predict the change in γ and vice versa. We also report initial results showing that disparity in intermolecular interactions drives multiphase coexistence. These findings provide much needed guidance for understanding how biomolecular condensates mediate cellular functions.
© 2021 The Protein Society.

Entities:  

Keywords:  biomolecular condensates; interfacial tension; multiphase coexistence; phase equilibrium; phase separation

Mesh:

Year:  2021        PMID: 33864415      PMCID: PMC8197429          DOI: 10.1002/pro.4084

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.993


  27 in total

1.  Tug of War between Condensate Phases in a Minimal Macromolecular System.

Authors:  Archishman Ghosh; Xiaojia Zhang; Huan-Xiang Zhou
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2.  ON THE MECHANISM OF TISSUE RECONSTRUCTION BY DISSOCIATED CELLS, III. FREE ENERGY RELATIONS AND THE REORGANIZATION OF FUSED, HETERONOMIC TISSUE FRAGMENTS.

Authors:  M S Steinberg
Journal:  Proc Natl Acad Sci U S A       Date:  1962-10       Impact factor: 11.205

3.  Coarse-grained residue-based models of disordered protein condensates: utility and limitations of simple charge pattern parameters.

Authors:  Suman Das; Alan N Amin; Yi-Hsuan Lin; Hue Sun Chan
Journal:  Phys Chem Chem Phys       Date:  2018-11-21       Impact factor: 3.676

Review 4.  Organization and Function of Non-dynamic Biomolecular Condensates.

Authors:  Jeffrey B Woodruff; Anthony A Hyman; Elvan Boke
Journal:  Trends Biochem Sci       Date:  2017-12-16       Impact factor: 13.807

5.  Three archetypical classes of macromolecular regulators of protein liquid-liquid phase separation.

Authors:  Archishman Ghosh; Konstantinos Mazarakos; Huan-Xiang Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-10       Impact factor: 11.205

6.  A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins.

Authors:  Jie Wang; Jeong-Mo Choi; Alex S Holehouse; Hyun O Lee; Xiaojie Zhang; Marcus Jahnel; Shovamayee Maharana; Régis Lemaitre; Andrei Pozniakovsky; David Drechsel; Ina Poser; Rohit V Pappu; Simon Alberti; Anthony A Hyman
Journal:  Cell       Date:  2018-06-28       Impact factor: 41.582

7.  Macromolecular regulators have matching effects on the phase equilibrium and interfacial tension of biomolecular condensates.

Authors:  Konstantinos Mazarakos; Huan-Xiang Zhou
Journal:  Protein Sci       Date:  2021-04-24       Impact factor: 6.993

8.  Sequence determinants of protein phase behavior from a coarse-grained model.

Authors:  Gregory L Dignon; Wenwei Zheng; Young C Kim; Robert B Best; Jeetain Mittal
Journal:  PLoS Comput Biol       Date:  2018-01-24       Impact factor: 4.475

9.  Spontaneous driving forces give rise to protein-RNA condensates with coexisting phases and complex material properties.

Authors:  Steven Boeynaems; Alex S Holehouse; Venera Weinhardt; Denes Kovacs; Joris Van Lindt; Carolyn Larabell; Ludo Van Den Bosch; Rhiju Das; Peter S Tompa; Rohit V Pappu; Aaron D Gitler
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-29       Impact factor: 11.205

10.  A gel phase promotes condensation of liquid P granules in Caenorhabditis elegans embryos.

Authors:  Andrea Putnam; Madeline Cassani; Jarrett Smith; Geraldine Seydoux
Journal:  Nat Struct Mol Biol       Date:  2019-03-04       Impact factor: 15.369

View more
  5 in total

1.  Calculating Binodals and Interfacial Tension of Phase-Separated Condensates from Molecular Simulations with Finite-Size Corrections.

Authors:  Konstantinos Mazarakos; Sanbo Qin; Huan-Xiang Zhou
Journal:  Methods Mol Biol       Date:  2023

2.  Multiscale Modeling of Protein-RNA Condensation in and Out of Equilibrium.

Authors:  Rabia Laghmach; Isha Malhotra; Davit A Potoyan
Journal:  Methods Mol Biol       Date:  2023

3.  Multiphase organization is a second phase transition within multi-component biomolecular condensates.

Authors:  Konstantinos Mazarakos; Huan-Xiang Zhou
Journal:  J Chem Phys       Date:  2022-05-21       Impact factor: 4.304

4.  Macromolecular regulators have matching effects on the phase equilibrium and interfacial tension of biomolecular condensates.

Authors:  Konstantinos Mazarakos; Huan-Xiang Zhou
Journal:  Protein Sci       Date:  2021-04-24       Impact factor: 6.993

5.  RNA chain length and stoichiometry govern surface tension and stability of protein-RNA condensates.

Authors:  Rabia Laghmach; Ibraheem Alshareedah; Matthew Pham; Muralikrishna Raju; Priya R Banerjee; Davit A Potoyan
Journal:  iScience       Date:  2022-03-18
  5 in total

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