Literature DB >> 33860851

Microbacterium helvum sp. nov., a novel actinobacterium isolated from cow dung.

Xiao Li1, Lida Zhang1, Fuyan Huang1, Junwei Zhao1, Han Wang1, Yanjie Jiao1, Lulu Qian1, Xiangjing Wang2, Wensheng Xiang3,4.   

Abstract

A Gram-positive, aerobic, non-motile, non-spore-forming, short rod-shaped strain, NEAU-LLCT, was isolated from cow dung in Shangzhi City, Heilongjiang Province, Northeast China and identified by a polyphasic taxonomic study. Colonies was light yellow, round, with entire margin. Strain NEAU-LLCT was grown at 15-45 ℃ and pH 6.0-10.0. NaCl concentration ranged from 0 to 5% (W/V). The 16S rRNA gene sequence of NEAU-LLCT showed the high similarities with Microbacterium kyungheense JCM 18735T (98.5%), Microbacterium trichothecenolyticum JCM 1358T (98.3%) and Microbacterium jejuense JCM 18734T (98.2%). The whole-cell sugars were glucose, rhamnose and ribose. The menaquinones contained MK-12 and MK-13. Ornithine, glutamic acid, lysine and a small amount of alanine and glycine were the amino acids in the hydrolyzed products of the cell wall. The major fatty acids were iso-C16:0, iso-C18:0, anteiso-C15:0 and anteiso-C17:0. The main polar lipids were diphosphatidylglycerol, phosphatidylglycerol and an unidentified glycolipid. The genome of NEAU-LLCT was 4,369,375 bp and G + C content is 70.28 mol%. A combination of DNA-DNA hybridization result and some phenotypic characteristics demonstrated that strain NEAU-LLCT could be distinguished from its closely related strains. Therefore, the strain NEAU-LLCT was considered to represent a novel species, which was named Microbacterium helvum sp. (Type strain NEAU-LLCT = CCTCC AA 2018026T = JCM 32661T).

Entities:  

Keywords:  16S rRNA gene; Genome; Microbacterium helvum sp. nov.; Polyphasic taxonomy

Year:  2021        PMID: 33860851     DOI: 10.1007/s00203-021-02311-9

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  36 in total

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Journal:  Plant Dis       Date:  2020-04-22       Impact factor: 4.438

2.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

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Journal:  Int J Syst Evol Microbiol       Date:  2016-08-03       Impact factor: 2.747

Review 4.  Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea.

Authors:  Jongsik Chun; Fred A Rainey
Journal:  Int J Syst Evol Microbiol       Date:  2014-02       Impact factor: 2.747

5.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

6.  The quantitative measurement of DNA hybridization from renaturation rates.

Authors:  J De Ley; H Cattoir; A Reynaerts
Journal:  Eur J Biochem       Date:  1970-01

7.  Microbacterium endophyticum sp. nov. and Microbacterium halimionae sp. nov., endophytes isolated from the salt-marsh plant Halimione portulacoides and emended description of the genus Microbacterium.

Authors:  Artur Alves; António Correia; José M Igual; Martha E Trujillo
Journal:  Syst Appl Microbiol       Date:  2014-09-06       Impact factor: 4.022

8.  Microbacterium diaminobutyricum sp. nov., isolated from Halimione portulacoides, which contains diaminobutyric acid in its cell wall, and emended description of the genus Microbacterium.

Authors:  Cátia Fidalgo; Raúl Riesco; Isabel Henriques; Martha E Trujillo; Artur Alves
Journal:  Int J Syst Evol Microbiol       Date:  2016-08-04       Impact factor: 2.747

9.  Microbacterium binotii sp. nov., isolated from human blood.

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Journal:  Int J Syst Evol Microbiol       Date:  2009-05       Impact factor: 2.747

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Authors:  M D Collins; D Jones; R M Kroppenstedt
Journal:  Syst Appl Microbiol       Date:  1983       Impact factor: 4.022

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  1 in total

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Authors:  Qiao Yang; Ya-Ming Ge; Nurhezreen Md Iqbal; Xi Yang; Xiao-Ling Zhang
Journal:  Antonie Van Leeuwenhoek       Date:  2021-04-24       Impact factor: 2.271

  1 in total

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