Literature DB >> 33837709

Engineering aminoacyl-tRNA synthetases for use in synthetic biology.

Natalie Krahn1, Jeffery M Tharp1, Ana Crnković1, Dieter Söll2.   

Abstract

Within the broad field of synthetic biology, genetic code expansion (GCE) techniques enable creation of proteins with an expanded set of amino acids. This may be invaluable for applications in therapeutics, bioremediation, and biocatalysis. Central to GCE are aminoacyl-tRNA synthetases (aaRSs) as they link a non-canonical amino acid (ncAA) to their cognate tRNA, allowing ncAA incorporation into proteins on the ribosome. The ncAA-acylating aaRSs and their tRNAs should not cross-react with 20 natural aaRSs and tRNAs in the host, i.e., they need to function as an orthogonal translating system. All current orthogonal aaRStRNA pairs have been engineered from naturally occurring molecules to change the aaRS's amino acid specificity or assign the tRNA to a liberated codon of choice. Here we discuss the importance of orthogonality in GCE, laboratory techniques employed to create designer aaRSs and tRNAs, and provide an overview of orthogonal aaRStRNA pairs for GCE purposes.
© 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Aminoacyl-tRNA synthetases; Evolution; Genetic code expansion; Non-canonical amino acid; Suppressor; Synthetic biology; tRNA

Mesh:

Substances:

Year:  2020        PMID: 33837709      PMCID: PMC8086897          DOI: 10.1016/bs.enz.2020.06.004

Source DB:  PubMed          Journal:  Enzymes        ISSN: 1874-6047


  178 in total

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7.  Addition of p-azido-L-phenylalanine to the genetic code of Escherichia coli.

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Journal:  J Am Chem Soc       Date:  2002-08-07       Impact factor: 15.419

8.  Exploring the substrate range of wild-type aminoacyl-tRNA synthetases.

Authors:  Chenguang Fan; Joanne M L Ho; Napon Chirathivat; Dieter Söll; Yane-Shih Wang
Journal:  Chembiochem       Date:  2014-05-30       Impact factor: 3.164

9.  Recognition of pyrrolysine tRNA by the Desulfitobacterium hafniense pyrrolysyl-tRNA synthetase.

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Journal:  Nucleic Acids Res       Date:  2007-01-31       Impact factor: 16.971

10.  Crystal structures reveal an elusive functional domain of pyrrolysyl-tRNA synthetase.

Authors:  Tateki Suzuki; Corwin Miller; Li-Tao Guo; Joanne M L Ho; David I Bryson; Yane-Shih Wang; David R Liu; Dieter Söll
Journal:  Nat Chem Biol       Date:  2017-10-16       Impact factor: 15.040

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  5 in total

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Authors:  Jonathan T Fischer; Dieter Söll; Jeffery M Tharp
Journal:  Front Mol Biosci       Date:  2022-03-09

2.  The tRNA discriminator base defines the mutual orthogonality of two distinct pyrrolysyl-tRNA synthetase/tRNAPyl pairs in the same organism.

Authors:  Haolin Zhang; Xuemei Gong; Qianqian Zhao; Takahito Mukai; Oscar Vargas-Rodriguez; Huiming Zhang; Yuxing Zhang; Paul Wassel; Kazuaki Amikura; Julie Maupin-Furlow; Yan Ren; Xun Xu; Yuri I Wolf; Kira S Makarova; Eugene V Koonin; Yue Shen; Dieter Söll; Xian Fu
Journal:  Nucleic Acids Res       Date:  2022-04-25       Impact factor: 19.160

Review 3.  Unconventional genetic code systems in archaea.

Authors:  Kexin Meng; Christina Z Chung; Dieter Söll; Natalie Krahn
Journal:  Front Microbiol       Date:  2022-09-08       Impact factor: 6.064

Review 4.  Engineering of enzymes using non-natural amino acids.

Authors:  Yiwen Li; Paul A Dalby
Journal:  Biosci Rep       Date:  2022-08-31       Impact factor: 3.976

5.  Uncovering translation roadblocks during the development of a synthetic tRNA.

Authors:  Arjun Prabhakar; Natalie Krahn; Jingji Zhang; Oscar Vargas-Rodriguez; Miri Krupkin; Ziao Fu; Francisco J Acosta-Reyes; Xueliang Ge; Junhong Choi; Ana Crnković; Måns Ehrenberg; Elisabetta Viani Puglisi; Dieter Söll; Joseph Puglisi
Journal:  Nucleic Acids Res       Date:  2022-10-14       Impact factor: 19.160

  5 in total

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