| Literature DB >> 33831118 |
Oh Joo Kweon1, Yong Kwan Lim1, Hye Ryoun Kim1, Yoojeong Choi1, Min-Chul Kim2, Seong-Ho Choi2, Jin-Won Chung2, Mi-Kyung Lee1.
Abstract
We evaluated the diagnostic accuracy of two newly developed, point-of-care, rapid antigen tests (RATs) for detectiene">ngEntities:
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Year: 2021 PMID: 33831118 PMCID: PMC8031412 DOI: 10.1371/journal.pone.0249972
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Diagnostic sensitivity of the AFIAS COVID-19 Ag and the ichromaTM COVID-19 Ag, the rapid point-of-care SARS-CoV-2 antigen assays compared to real-time RT-PCR assay for SARS-CoV-2 detection.
| PCR, | PCR, | PCR, | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ct value | <25 | 25‒30 | 30‒40 | Total | <25 | 25‒30 | 30‒40 | Total | <25 | 25‒30 | 30‒40 | Total | |
| AFIAS | Positive (N) | 42 | 16 | 8 | 66 | 35 | 20 | 11 | 66 | 28 | 26 | 12 | 66 |
| Negative (N) | 4 | 31 | 40 | 75 | 0 | 28 | 62 | 90 | 0 | 19 | 82 | 101 | |
| Sensitivity (%) | 91.3 | 34.0 | 16.7 | 46.8 | 100.0 | 41.7 | 15.1 | 42.3 | 100.0 | 57.8 | 12.8 | 39.5 | |
| ichromaTM | Positive (N) | 44 | 18 | 2 | 64 | 35 | 24 | 5 | 64 | 28 | 29 | 7 | 64 |
| Negative (N) | 2 | 29 | 46 | 77 | 0 | 24 | 68 | 92 | 0 | 16 | 87 | 103 | |
| Sensitivity (%) | 95.7 | 38.3 | 4.2 | 45.4 | 100.0 | 50.0 | 6.9 | 41.0 | 100.0 | 64.4 | 7.5 | 38.3 | |
Abbreviations: Ag, antigen; Ct, cycle threshold value; AFIAS, AFIAS COVID-19 Ag (Boditech Med., Chuncheon-si, Gang-won-do, Republic of Korea); ichromaTM, ichromaTM COVID-19 Ag (Boditech Med.)
Simulated negative and positive predictive values of the AFIAS COVID-19 Ag and the ichromaTM COVID-19 Ag assays according to the disease prevalence for the SARS-CoV-2 positive nasopharyngeal swab specimens with cycle threshold values less than 25.
| AFIAS | ichromaTM | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PPV (%) | NPV (%) | PPV (%) | NPV (%) | |||||||||
| Prevalence | ||||||||||||
| 0.5% | 29.4 | 29.5 | 27.9 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 |
| 1.0% | 45.6 | 45.7 | 43.7 | 99.9 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 |
| 2.0% | 62.9 | 63.0 | 61.1 | 99.8 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 99.9 | 100.0 | 100.0 |
| 5.0% | 81.4 | 81.4 | 80.2 | 99.5 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 99.8 | 100.0 | 100.0 |
| 10.0% | 90.2 | 90.3 | 89.5 | 99.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 99.5 | 100.0 | 100.0 |
Abbreviations: Ag, antigen; AFIAS, AFIAS COVID-19 Ag (Boditech Med., Chuncheon-si, Gang-won-do, Republic of Korea); ichromaTM, ichromaTM COVID-19 Ag (Boditech Med.); PPV, positive predictive value; NPV, negative predictive value
Fig 1Cycle threshold value distribution of E, RdRP, and N genes according to the positivity of (A) the AFIAS COVID-19 Ag and (B) the ichromaTM COVID-19 Ag assays. Abbreviations: Ag, antigen; PSO, Pos.; positive; Neg., negative.
Diagnostic sensitivity of the AFIAS COVID-19 Ag and the ichromaTM COVID-19 Ag assays according to the days post-symptom onset.
| ≤ 7 days PSO (Ct < 40 / < 25) | 8–14 days PSO (Ct < 40 / < 25) | >14 days PSO (Ct < 40 / < 25) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| AFIAS | Positive, N | 27 / 21 | 27 / 19 | 27 /17 | 32 / 21 | 32 / 16 | 32 / 11 | 7 / 0 | 7 / -a | 7 / - |
| Negative, N | 5 / 0 | 5 / 0 | 5 / 0 | 36 / 2 | 42 / 0 | 44 / 0 | 34 / 2 | 43 / - | 52 / - | |
| Sensitivity, % | 84.4 / 100.0 | 84.4 / 100.0 | 84.4 / 100.0 | 47.1 / 91.3% | 43.2 / 100.0 | 42.1 / 100.0 | 17.1 / 0.0 | 14.0 / - | 11.9 / - | |
| ichromaTM | Positive, N | 26 / 21 | 26 / 19 | 26 / 17 | 36 / 23 | 36 / 16 | 35 / 11 | 2 / 0 | 2 / - | 2 / - |
| Negative, N | 6 / 0 | 6 / 0 | 6 / 0 | 36 / 0 | 38 / 0 | 40 / 0 | 39 / 2 | 48 / - | 57 / - | |
| Sensitivity, % | 81.3 / 100.0 | 81.3 / 100.0 | 81.3 / 100.0 | 52.9 / 100.0 | 48.7 / 100.0 | 47.4 / 100.0 | 4.9 / 0.0 | 4.0 / - | 3.4 / - | |
Abbreviations: Ag, antigen; PSO, post-symptom onset; Ct, cycle threshold value; AFIAS, AFIAS COVID-19 Ag (Boditech Med., Chuncheon-si, Gang-won-do, Republic of Korea); ichromaTM, ichromaTM COVID-19 Ag (Boditech Med.)
a. There were no specimens with RdRP and N Ct < 25, which were collected after 14-days PSO.
Fig 2Antigen kinetics determined for specimens from 38 COVID-19 patients at different post-symptom-onset periods assessed by two antigen assays according to cut-off index values, the AFIAS COVID-19 Ag and the ichromaTM COVID-19 Ag.
The smoothing splines of both assays showed gradual decrement from the days 1‒7 to days >22, while it was shown that their RdRP gene cyclic threshold values gradually increased or their viral loads decreased. Abbreviations: Ag, antigen; COI, cut-off index; AFIAS, AFIAS COVID-19 Ag (Boditech Med., Chuncheon-si, Gang-won-do, Republic of Korea); ichroma, ichromaTM COVID-19 Ag (Boditech Med.); Ct, cycle threshold.