Literature DB >> 33800471

Prediction of Functional Consequences of Missense Mutations in ANO4 Gene.

Nadine Reichhart1, Vladimir M Milenkovic2, Christian H Wetzel2, Olaf Strauß1.   

Abstract

The anoctamin (TMEM16) family of transmembrane protein consists of ten members in vertebrates, which act as Ca2+-dependent ion channels and/or Ca2+-dependent scramblases. ANO4 which is primarily expressed in the CNS and certain endocrine glands, has been associated with various neuronal disorders. Therefore, we focused our study on prioritizing missense mutations that are assumed to alter the structure and stability of ANO4 protein. We employed a wide array of evolution and structure based in silico prediction methods to identify potentially deleterious missense mutations in the ANO4 gene. Identified pathogenic mutations were then mapped to the modeled human ANO4 structure and the effects of missense mutations were studied on the atomic level using molecular dynamics simulations. Our data show that the G80A and A500T mutations significantly alter the stability of the mutant proteins, thus providing new perspective on the role of missense mutations in ANO4 gene. Results obtained in this study may help to identify disease associated mutations which affect ANO4 protein structure and function and might facilitate future functional characterization of ANO4.

Entities:  

Keywords:  ANO4 gene; ANO4 protein; SNP; disease-association; homology model; molecular dynamics simulation; protein stability; protein structure

Mesh:

Substances:

Year:  2021        PMID: 33800471      PMCID: PMC7962975          DOI: 10.3390/ijms22052732

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  42 in total

1.  dbSNP: the NCBI database of genetic variation.

Authors:  S T Sherry; M H Ward; M Kholodov; J Baker; L Phan; E M Smigielski; K Sirotkin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Increasing the precision of comparative models with YASARA NOVA--a self-parameterizing force field.

Authors:  Elmar Krieger; Günther Koraimann; Gert Vriend
Journal:  Proteins       Date:  2002-05-15

3.  Making optimal use of empirical energy functions: force-field parameterization in crystal space.

Authors:  Elmar Krieger; Tom Darden; Sander B Nabuurs; Alexei Finkelstein; Gert Vriend
Journal:  Proteins       Date:  2004-12-01

Review 4.  TMEM16 proteins: unknown structure and confusing functions.

Authors:  Alessandra Picollo; Mattia Malvezzi; Alessio Accardi
Journal:  J Mol Biol       Date:  2014-10-17       Impact factor: 5.469

Review 5.  Anoctamin 2/TMEM16B: a calcium-activated chloride channel in olfactory transduction.

Authors:  Simone Pifferi; Valentina Cenedese; Anna Menini
Journal:  Exp Physiol       Date:  2011-09-02       Impact factor: 2.969

6.  Substitution impact of highly conserved arginine residue at position 75 in GJB1 gene in association with X-linked Charcot-Marie-tooth disease: A computational study.

Authors:  Ashish Kumar Agrahari; Amit Kumar; Siva R; Hatem Zayed; George Priya Doss C
Journal:  J Theor Biol       Date:  2017-10-28       Impact factor: 2.691

7.  Gene variants associated with schizophrenia in a Norwegian genome-wide study are replicated in a large European cohort.

Authors:  Lavinia Athanasiu; Morten Mattingsdal; Anna K Kähler; Andrew Brown; Omar Gustafsson; Ingrid Agartz; Ina Giegling; Pierandrea Muglia; Sven Cichon; Marcella Rietschel; Olli P H Pietiläinen; Leena Peltonen; Elvira Bramon; David Collier; David St Clair; Engilbert Sigurdsson; Hannes Petursson; Dan Rujescu; Ingrid Melle; Vidar M Steen; Srdjan Djurovic; Ole A Andreassen
Journal:  J Psychiatr Res       Date:  2010-02-24       Impact factor: 4.791

8.  ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules.

Authors:  Haim Ashkenazy; Shiran Abadi; Eric Martz; Ofer Chay; Itay Mayrose; Tal Pupko; Nir Ben-Tal
Journal:  Nucleic Acids Res       Date:  2016-05-10       Impact factor: 16.971

9.  Gene Expression Profiling of Multiple Sclerosis Pathology Identifies Early Patterns of Demyelination Surrounding Chronic Active Lesions.

Authors:  Debbie A E Hendrickx; Jackelien van Scheppingen; Marlijn van der Poel; Koen Bossers; Karianne G Schuurman; Corbert G van Eden; Elly M Hol; Jörg Hamann; Inge Huitinga
Journal:  Front Immunol       Date:  2017-12-21       Impact factor: 7.561

10.  Complex polymorphisms in endocytosis genes suggest alpha-cyclodextrin as a treatment for breast cancer.

Authors:  Knut M Wittkowski; Christina Dadurian; Martin P Seybold; Han Sang Kim; Ayuko Hoshino; David Lyden
Journal:  PLoS One       Date:  2018-07-02       Impact factor: 3.240

View more
  3 in total

1.  Influence of Anoctamin-4 and -9 on ADAM10 and ADAM17 Sheddase Function.

Authors:  Sinje Leitzke; Jana Seidel; Björn Ahrens; Rainer Schreiber; Karl Kunzelmann; Maria Sperrhacke; Sucharit Bhakdi; Karina Reiss
Journal:  Membranes (Basel)       Date:  2022-01-20

Review 2.  Scramblases as Regulators of Proteolytic ADAM Function.

Authors:  Karina Reiss; Sinje Leitzke; Jana Seidel; Maria Sperrhacke; Sucharit Bhakdi
Journal:  Membranes (Basel)       Date:  2022-02-04

Review 3.  Polymodal Control of TMEM16x Channels and Scramblases.

Authors:  Emilio Agostinelli; Paolo Tammaro
Journal:  Int J Mol Sci       Date:  2022-01-29       Impact factor: 5.923

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.