| Literature DB >> 34961255 |
Shandry M Tebele1, Rose A Marks1,2,3, Jill M Farrant1.
Abstract
Resurrection plants have an extraordinary ability to survive extreme water loss but still revive full metabolic activity when rehydrated. These plants are useful models to understand the complex biology of vegetative desiccation tolerance. Despite extensive studies of resurrection plants, many details underlying the mechanisms of desiccation tolerance remain unexplored. To summarize the progress in resurrection plant research and identify unexplored questions, we conducted a systematic review of 15 model angiosperm resurrection plants. This systematic review provides an overview of publication trends on resurrection plants, the geographical distribution of species and studies, and the methodology used. Using the Preferred Reporting Items for Systematic reviews and Meta-Analyses protocol we surveyed all publications on resurrection plants from 2000 and 2020. This yielded 185 empirical articles that matched our selection criteria. The most investigated plants were Craterostigma plantagineum (17.5%), Haberlea rhodopensis (13.7%), Xerophyta viscosa (reclassified as X. schlechteri) (11.9%), Myrothamnus flabellifolia (8.5%), and Boea hygrometrica (8.1%), with all other species accounting for less than 8% of publications. The majority of studies have been conducted in South Africa, Bulgaria, Germany, and China, but there are contributions from across the globe. Most studies were led by researchers working within the native range of the focal species, but some international and collaborative studies were also identified. The number of annual publications fluctuated, with a large but temporary increase in 2008. Many studies have employed physiological and transcriptomic methodologies to investigate the leaves of resurrection plants, but there was a paucity of studies on roots and only one metagenomic study was recovered. Based on these findings we suggest that future research focuses on resurrection plant roots and microbiome interactions to explore microbial communities associated with these plants, and their role in vegetative desiccation tolerance.Entities:
Keywords: angiosperm resurrection plants; desiccation tolerance; omics technologies; systematic review
Year: 2021 PMID: 34961255 PMCID: PMC8706221 DOI: 10.3390/plants10122784
Source DB: PubMed Journal: Plants (Basel) ISSN: 2223-7747
Figure 1Systematic reviews and Meta–Analyses (PRISMA) flow chart outlining the exclusion and selection procedure used in the current meta-analysis with corresponding records from the database of angiosperm resurrection plants.
Figure 2The number of studies published on each resurrection plant species. Species are ordered phylogenetically. Studies are categorized as either native (conducted by researchers working in the native range of the species), collaborative (involving researchers from both within and beyond the native range of the species) or international (studies conducted by a team working outside of the native range of the species).
The best studied angiosperm resurrection plants in the past two decades and their native range.
| Resurrection Plant | Continent | Region | Reference |
|---|---|---|---|
| Monocot | |||
|
| Africa | Southern Africa | [ |
|
| Asia and East Africa | India, Northeast tropical and East tropical Africa | [ |
|
| Africa | South Africa | [ |
|
| Australia | Australia | [ |
|
| Africa | Southern Africa | [ |
|
| Africa | Lesotho, South Africa, Swaziland | [ |
| Dicot | |||
|
| Asia | China | [ |
|
| Africa | Kenya, South Africa | [ |
|
| Africa | East Africa | [ |
|
| Africa | South Africa | [ |
|
| Europe | Bulgaria | [ |
|
| Africa | Kenya | [ |
|
| Africa | Namibia, South Africa, Zimbabwe | [ |
|
| Europe | Serbia, Bulgaria | [ |
|
| Europe | Serbia, Bulgaria | [ |
Figure 3Map showing where the model resurrection plants are native to relative to where they have been studied. Circles indicate the native area of the species and are scaled by the number of studies conducted in their native range. Arrows point to the location where international and collaborative studies have been conducted and are scaled by the number of studies. Dashed arrows are for collaborative studies and solid arrows are for international studies. Plants in the same genus (or family for grasses) are consolidated for simplicity and studies are grouped by continent.
Figure 4The number of studies exploring desiccation tolerance mechanisms of resurrection plants in the past two decades using various techniques. (A) Research articles published per year from 2000–2020 focused on Genomic (genetics), Transcriptomic (RNA), Proteomic (proteins), Metabolomic (metabolites), Metagenomic (microbes), and Physiological (biochemical) techniques to understand the mechanisms of desiccation tolerance in resurrection plants. (B) Analysis of publication trends of five most widely analyzed angiosperm resurrection plants, namely B. hygrometrica, C. plantagineum, H. rhodopensis, M. flabellifolia and X. schlechteri studies per year.
Tools and technologies used for investigation of desiccation tolerance mechanisms in resurrection plants.
| Technology–Based Approach | Genomics | Transcriptomics | Proteomics | Metabolomics | Physiology | Metagenomics |
|---|---|---|---|---|---|---|
| DNA sequencing, genetic profile, genetic mapping, structural & functional genomics | RNA sequencing, expression profiling, transcriptional regulation | Protein identification, quantification, Translation modification | Metabolites profiling, identification & quantification | Morphological, biochemical & phenotypical characterization | Bacterial and fungal and viral nucleic acids analysis | |
| Methodology and Quantitative techniques |
Southern blotting DNA sequencing and cloning Polymerase chain reaction (PCR) DNA microarray |
RNA gel blot (Northern blotting) cDNA-AFLP qRT-PCR |
Western blotting 1/2D SDS–PAGE Protein microarray iTRAQ proteomic analysis |
Sonication Chromatography-based techniques |
Machine-learning Digital colour camera (JVC) Light microscope Confocal laser scanning microscope |
Nucleic acid extraction Denaturing gradient gel electrophoresis (DGGE) PCR |
| High–throughput techniques |
Single nucleotide polymorphism (SNP) Marker-assisted selection Quantitative trait loci (QTL) mapping |
Hybridization technology based chip (cDNA-chip), Serial analysis of gene expression (SAGE) Expressed sequence tags (ESTs) RNA-sequencing, RNA-PET-seq sRNA-seq |
Matrix assisted laser desorption ionization (MALDI-TOF/MS) LC-MS/MS X-ray crystallography NMR spectroscopy |
Ion mobility spectrometry-mass spectrometry (IM-MS) NMR spectroscopy Gas chromatography-mass spectrometry (GC-MS), LC-MS/MS Electrospray ionization multistage tandem mass spectrometry (ESI-MS) |
X-ray tomography Transmission electromagnetic microscope Scanning electron microscope Fluorescence and infrared imaging Spectral, 3D, magnetic resonance imager |
Whole metagenomic shotgun sequencing Amplicon metagenomic sequencing |
| References | [ | [ | [ | [ | [ | [ |
Key: cDNA-AFLP (cDNA-amplified fragment length polymorphism); qRT-PCR (real-time quantitative PCR); RNA-PET-seq (paired end sequencing); sRNA-seq (small RNA sequencing); SDS-PAGE (sodium dodecyl sulphate–polyacrylamide gel electrophoresis); iTRAQ (isobaric tag for relative and absolute quantitation); LC-MS (liquid chromatography-mass spectrometry); NMR (nuclear magnetic resonance).