Literature DB >> 33787228

Detection and Quantification of Tightly Bound Zn2+ in Blood Serum Using a Photocaged Chelator and a DNAzyme Fluorescent Sensor.

Shige Xing1,2, Yao Lin1,3, Liangyuan Cai1, Prem N Basa4, Austin K Shigemoto4, Chengbin Zheng5, Feng Zhang2, Shawn C Burdette4, Yi Lu1.   

Abstract

DNAzymes have emerged as a powerful class of sensors for metal ions due to their high selectivity over a wide range of metal ions, allowing for on-site and real-time detection. Despite much progress made in this area, detecting and quantifying tightly bound metal ions, such as those in the blood serum, remain a challenge because the DNAzyme sensors reported so far can detect only mobile metal ions that are accessible to bind the DNAzymes. To overcome this major limitation, we report the use of a photocaged chelator, XDPAdeCage to extract the Zn2+ from the blood serum and then release the chelated Zn2+ into a buffer using 365 nm light for quantification by an 8-17 DNAzyme sensor. Protocols to chelate, uncage, extract, and detect metal ions in the serum have been developed and optimized. Because DNAzyme sensors for other metal ions have already been reported and more DNAzyme sensors can be obtained using in vitro selection, the method reported in this work will significantly expand the applications of the DNAzyme sensors from sensing metal ions that are not only free but also bound to other biomolecules in biological and environmental samples.

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Year:  2021        PMID: 33787228      PMCID: PMC9169884          DOI: 10.1021/acs.analchem.1c00140

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   8.008


  44 in total

1.  An Exceptionally Selective DNA Cooperatively Binding Two Ca2+ Ions.

Authors:  Wenhu Zhou; Runjhun Saran; Po-Jung Jimmy Huang; Jinsong Ding; Juewen Liu
Journal:  Chembiochem       Date:  2017-02-08       Impact factor: 3.164

2.  A Silver DNAzyme.

Authors:  Runjhun Saran; Juewen Liu
Journal:  Anal Chem       Date:  2016-03-24       Impact factor: 6.986

3.  Efficient DNA-Catalyzed Porphyrin Metalation for Fluorescent Ratiometric Pb2+ Detection.

Authors:  Dong Peng; Yuqing Li; Zhicheng Huang; Ru-Ping Liang; Jian-Ding Qiu; Juewen Liu
Journal:  Anal Chem       Date:  2019-08-22       Impact factor: 6.986

4.  A DNA enzyme that cleaves RNA.

Authors:  R R Breaker; G F Joyce
Journal:  Chem Biol       Date:  1994-12

Review 5.  DNAzyme sensors for detection of metal ions in the environment and imaging them in living cells.

Authors:  Claire E McGhee; Kang Yong Loh; Yi Lu
Journal:  Curr Opin Biotechnol       Date:  2017-04-28       Impact factor: 9.740

6.  Electrochemical DNAzyme sensor for lead based on amplification of DNA-Au bio-bar codes.

Authors:  Li Shen; Zhong Chen; Yihan Li; Shali He; Shubao Xie; Xiaodong Xu; Zhongwei Liang; Xin Meng; Qing Li; Zhiwei Zhu; Meixian Li; X Chris Le; Yuanhua Shao
Journal:  Anal Chem       Date:  2008-07-15       Impact factor: 6.986

7.  A Zinc(II) Photocage Based on a Decarboxylation Metal Ion Release Mechanism for Investigating Homeostasis and Biological Signaling.

Authors:  Prem N Basa; Sagar Antala; Robert E Dempski; Shawn C Burdette
Journal:  Angew Chem Int Ed Engl       Date:  2015-09-08       Impact factor: 15.336

Review 8.  Enzyme-Mediated Endogenous and Bioorthogonal Control of a DNAzyme Fluorescent Sensor for Imaging Metal Ions in Living Cells.

Authors:  Yao Lin; Zhenglin Yang; Ryan J Lake; Chengbin Zheng; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-15       Impact factor: 15.336

9.  A microRNA-initiated DNAzyme motor operating in living cells.

Authors:  Hanyong Peng; Xing-Fang Li; Hongquan Zhang; X Chris Le
Journal:  Nat Commun       Date:  2017-03-06       Impact factor: 14.919

10.  Colorimetric Detection of Uranyl Using a Litmus Test.

Authors:  Sepehr Manochehry; Erin M McConnell; Kha Q Tram; Joseph Macri; Yingfu Li
Journal:  Front Chem       Date:  2018-08-09       Impact factor: 5.221

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  1 in total

Review 1.  Overcoming Major Barriers to Developing Successful Sensors for Practical Applications Using Functional Nucleic Acids.

Authors:  JingJing Zhang; Tian Lan; Yi Lu
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2022-02-25       Impact factor: 12.400

  1 in total

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