Literature DB >> 26977895

A Silver DNAzyme.

Runjhun Saran1, Juewen Liu1.   

Abstract

Silver is a very common heavy metal, and its detection is of significant analytical importance. DNAzymes are DNA-based catalysts; they typically recruit divalent and trivalent metal ions for catalysis. Herein, we report a silver-specific RNA-cleaving DNAzyme named Ag10c obtained after six rounds of in vitro selection. Ag10c displays a catalytic rate of 0.41 min(-1) with 10 μM Ag(+) at pH 7.5 with 200 mM NaNO3, while its activity is completely inhibited with the same concentration of NaCl. Ag10c is highly specific for Ag(+) among all the tested metals. A catalytic beacon biosensor is designed by labeling a fluorophore and a quencher on the DNAzyme. Fluorescence enhancement is observed in the presence of Ag(+) with a detection limit of 24.9 nM Ag(+). The sensor shows a similar analytical performance in Lake Huron water. This is the first monovalent transition metal dependent RNA-cleaving DNAzyme. Apart from its biosensor application, this study strengthens the idea of exploring beyond the traditional understanding of multivalent ion dependent DNAzyme catalysis.

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Year:  2016        PMID: 26977895     DOI: 10.1021/acs.analchem.6b00327

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  31 in total

Review 1.  Metal-Dependent DNAzymes for the Quantitative Detection of Metal Ions in Living Cells: Recent Progress, Current Challenges, and Latest Results on FRET Ratiometric Sensors.

Authors:  Kevin Hwang; Quanbing Mou; Ryan J Lake; Mengyi Xiong; Brandalynn Holland; Yi Lu
Journal:  Inorg Chem       Date:  2019-07-31       Impact factor: 5.165

2.  Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles.

Authors:  Zhenglin Yang; Kang Yong Loh; Yueh-Te Chu; Ruopei Feng; Nitya Sai Reddy Satyavolu; Mengyi Xiong; Stephanie M Nakamata Huynh; Kevin Hwang; Lele Li; Hang Xing; Xiaobing Zhang; Yann R Chemla; Martin Gruebele; Yi Lu
Journal:  J Am Chem Soc       Date:  2018-12-04       Impact factor: 15.419

3.  Selective tumor cell death induced by irradiated riboflavin through recognizing DNA G-T mismatch.

Authors:  Yi Yuan; Yongyun Zhao; Lianqi Chen; Jiasi Wu; Gangyi Chen; Sheng Li; Jiawei Zou; Rong Chen; Jian Wang; Fan Jiang; Zhuo Tang
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

4.  DNAzyme-Mediated Genetically Encoded Sensors for Ratiometric Imaging of Metal Ions in Living Cells.

Authors:  Mengyi Xiong; Zhenglin Yang; Ryan J Lake; Junjie Li; Shanni Hong; Huanhuan Fan; Xiao-Bing Zhang; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2019-12-18       Impact factor: 15.336

Review 5.  DNAzymes as Activity-Based Sensors for Metal Ions: Recent Applications, Demonstrated Advantages, Current Challenges, and Future Directions.

Authors:  Ryan J Lake; Zhenglin Yang; JingJing Zhang; Yi Lu
Journal:  Acc Chem Res       Date:  2019-11-13       Impact factor: 22.384

6.  DNA-Catalyzed DNA Cleavage by a Radical Pathway with Well-Defined Products.

Authors:  Yujeong Lee; Paul C Klauser; Benjamin M Brandsen; Cong Zhou; Xinyi Li; Scott K Silverman
Journal:  J Am Chem Soc       Date:  2016-12-27       Impact factor: 15.419

7.  From general base to general acid catalysis in a sodium-specific DNAzyme by a guanine-to-adenine mutation.

Authors:  Lingzi Ma; Sanjana Kartik; Biwu Liu; Juewen Liu
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

Review 8.  DNAzyme sensors for detection of metal ions in the environment and imaging them in living cells.

Authors:  Claire E McGhee; Kang Yong Loh; Yi Lu
Journal:  Curr Opin Biotechnol       Date:  2017-04-28       Impact factor: 9.740

9.  An RNA-cleaving threose nucleic acid enzyme capable of single point mutation discrimination.

Authors:  Yueyao Wang; Yao Wang; Dongfan Song; Xin Sun; Zhe Li; Jia-Yu Chen; Hanyang Yu
Journal:  Nat Chem       Date:  2021-12-16       Impact factor: 24.427

10.  A highly specific sodium aptamer probed by 2-aminopurine for robust Na+ sensing.

Authors:  Wenhu Zhou; Jinsong Ding; Juewen Liu
Journal:  Nucleic Acids Res       Date:  2016-09-20       Impact factor: 16.971

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