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Literature DB >> 33783596

The human microbiome and genetic disease: towards the integration of metagenomic and multi-omics data.

Huiying Zhao¹.

Abstract

Entities: Disease Species

Mesh：

Year: 2021 PMID： 33783596 DOI： 10.1007/s00439-021-02277-0

Source DB: PubMed Journal: Hum Genet ISSN： 0340-6717 Impact factor: 4.132

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17 in total

1. Patients with familial adenomatous polyposis harbor colonic biofilms containing tumorigenic bacteria.

Authors: Christine M Dejea; Payam Fathi; John M Craig; Annemarie Boleij; Rahwa Taddese; Abby L Geis; Xinqun Wu; Christina E DeStefano Shields; Elizabeth M Hechenbleikner; David L Huso; Robert A Anders; Francis M Giardiello; Elizabeth C Wick; Hao Wang; Shaoguang Wu; Drew M Pardoll; Franck Housseau; Cynthia L Sears
Journal: Science Date: 2018-02-01 Impact factor: 47.728

Review 2. Microbiome-wide association studies link dynamic microbial consortia to disease.

Authors: Jack A Gilbert; Robert A Quinn; Justine Debelius; Zhenjiang Z Xu; James Morton; Neha Garg; Janet K Jansson; Pieter C Dorrestein; Rob Knight
Journal: Nature Date: 2016-07-07 Impact factor: 49.962

Review 3. The microbiome, cancer, and cancer therapy.

Authors: Beth A Helmink; M A Wadud Khan; Amanda Hermann; Vancheswaran Gopalakrishnan; Jennifer A Wargo
Journal: Nat Med Date: 2019-03-06 Impact factor: 53.440

Review 4. The role of the microbiome in cancer development and therapy.

Authors: Aadra P Bhatt; Matthew R Redinbo; Scott J Bultman
Journal: CA Cancer J Clin Date: 2017-05-08 Impact factor: 508.702

5. Integration of epidemiologic, pharmacologic, genetic and gut microbiome data in a drug-metabolite atlas.

Authors: Jun Liu; Lies Lahousse; Michel G Nivard; Mariska Bot; Lianmin Chen; Jan Bert van Klinken; Carisha S Thesing; Marian Beekman; Erik Ben van den Akker; Roderick C Slieker; Eveline Waterham; Carla J H van der Kallen; Irene de Boer; Ruifang Li-Gao; Dina Vojinovic; Najaf Amin; Djawad Radjabzadeh; Robert Kraaij; Louise J M Alferink; Sarwa Darwish Murad; André G Uitterlinden; Gonneke Willemsen; Rene Pool; Yuri Milaneschi; Diana van Heemst; H Eka D Suchiman; Femke Rutters; Petra J M Elders; Joline W J Beulens; Amber A W A van der Heijden; Marleen M J van Greevenbroek; Ilja C W Arts; Gerrit L J Onderwater; Arn M J M van den Maagdenberg; Dennis O Mook-Kanamori; Thomas Hankemeier; Gisela M Terwindt; Coen D A Stehouwer; Johanna M Geleijnse; Leen M 't Hart; P Eline Slagboom; Ko Willems van Dijk; Alexandra Zhernakova; Jingyuan Fu; Brenda W J H Penninx; Dorret I Boomsma; Ayşe Demirkan; Bruno H C Stricker; Cornelia M van Duijn
Journal: Nat Med Date: 2020-01-13 Impact factor: 53.440

Review 6. The microbiome, genetics, and gastrointestinal neoplasms: the evolving field of molecular pathological epidemiology to analyze the tumor-immune-microbiome interaction.

Authors: Kosuke Mima; Keisuke Kosumi; Yoshifumi Baba; Tsuyoshi Hamada; Hideo Baba; Shuji Ogino
Journal: Hum Genet Date: 2020-11-12 Impact factor: 4.132

7. Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.

Authors: Susana Martínez Arbas; Shaman Narayanasamy; Malte Herold; Laura A Lebrun; Michael R Hoopmann; Sujun Li; Tony J Lam; Benoît J Kunath; Nathan D Hicks; Cindy M Liu; Lance B Price; Cedric C Laczny; John D Gillece; James M Schupp; Paul S Keim; Robert L Moritz; Karoline Faust; Haixu Tang; Yuzhen Ye; Alexander Skupin; Patrick May; Emilie E L Muller; Paul Wilmes
Journal: Nat Microbiol Date: 2020-11-02 Impact factor: 17.745

The human microbiome and genetic disease: towards the integration of metagenomic and multi-omics data.

1. Patients with familial adenomatous polyposis harbor colonic biofilms containing tumorigenic bacteria.

Review 2. Microbiome-wide association studies link dynamic microbial consortia to disease.

Review 3. The microbiome, cancer, and cancer therapy.

Review 4. The role of the microbiome in cancer development and therapy.

5. Integration of epidemiologic, pharmacologic, genetic and gut microbiome data in a drug-metabolite atlas.

Review 6. The microbiome, genetics, and gastrointestinal neoplasms: the evolving field of molecular pathological epidemiology to analyze the tumor-immune-microbiome interaction.

7. Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.

8. PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data.

9. Mucosal microbiome dysbiosis in gastric carcinogenesis.

10. Gut microbiota in inflammatory bowel diseases: moving from basic science to clinical applications.

1. Opportunities and limits of combining microbiome and genome data for complex trait prediction.