Literature DB >> 27383984

Microbiome-wide association studies link dynamic microbial consortia to disease.

Jack A Gilbert1, Robert A Quinn2,3,4, Justine Debelius5, Zhenjiang Z Xu5, James Morton6, Neha Garg2,3, Janet K Jansson7, Pieter C Dorrestein2,3,4,5, Rob Knight4,5,6.   

Abstract

Rapid advances in DNA sequencing, metabolomics, proteomics and computational tools are dramatically increasing access to the microbiome and identification of its links with disease. In particular, time-series studies and multiple molecular perspectives are facilitating microbiome-wide association studies, which are analogous to genome-wide association studies. Early findings point to actionable outcomes of microbiome-wide association studies, although their clinical application has yet to be approved. An appreciation of the complexity of interactions among the microbiome and the host's diet, chemistry and health, as well as determining the frequency of observations that are needed to capture and integrate this dynamic interface, is paramount for developing precision diagnostics and therapies that are based on the microbiome.

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Year:  2016        PMID: 27383984     DOI: 10.1038/nature18850

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  119 in total

Review 1.  Emerging applications of metabolomics in drug discovery and precision medicine.

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Journal:  Nat Rev Drug Discov       Date:  2016-03-11       Impact factor: 84.694

2.  Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5.

Authors:  Matam Vijay-Kumar; Jesse D Aitken; Frederic A Carvalho; Tyler C Cullender; Simon Mwangi; Shanthi Srinivasan; Shanthi V Sitaraman; Rob Knight; Ruth E Ley; Andrew T Gewirtz
Journal:  Science       Date:  2010-03-04       Impact factor: 47.728

3.  Periodontal disease and the oral microbiota in new-onset rheumatoid arthritis.

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Journal:  Arthritis Rheum       Date:  2012-10

4.  Gut microbiota from twins discordant for obesity modulate metabolism in mice.

Authors:  Vanessa K Ridaura; Jeremiah J Faith; Federico E Rey; Jiye Cheng; Alexis E Duncan; Andrew L Kau; Nicholas W Griffin; Vincent Lombard; Bernard Henrissat; James R Bain; Michael J Muehlbauer; Olga Ilkayeva; Clay F Semenkovich; Katsuhiko Funai; David K Hayashi; Barbara J Lyle; Margaret C Martini; Luke K Ursell; Jose C Clemente; William Van Treuren; William A Walters; Rob Knight; Christopher B Newgard; Andrew C Heath; Jeffrey I Gordon
Journal:  Science       Date:  2013-09-06       Impact factor: 47.728

5.  Structure, function and diversity of the healthy human microbiome.

Authors: 
Journal:  Nature       Date:  2012-06-13       Impact factor: 49.962

6.  Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection.

Authors:  Alexa Weingarden; Antonio González; Yoshiki Vázquez-Baeza; Sophie Weiss; Gregory Humphry; Donna Berg-Lyons; Dan Knights; Tatsuya Unno; Aleh Bobr; Johnthomas Kang; Alexander Khoruts; Rob Knight; Michael J Sadowsky
Journal:  Microbiome       Date:  2015-03-30       Impact factor: 14.650

7.  Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation.

Authors:  Cecilia Noecker; Alexander Eng; Sujatha Srinivasan; Casey M Theriot; Vincent B Young; Janet K Jansson; David N Fredricks; Elhanan Borenstein
Journal:  mSystems       Date:  2016-01-19       Impact factor: 6.496

8.  Altered gut microbial energy and metabolism in children with non-alcoholic fatty liver disease.

Authors:  Sonia Michail; Malinda Lin; Mark R Frey; Rob Fanter; Oleg Paliy; Brian Hilbush; Nicholas V Reo
Journal:  FEMS Microbiol Ecol       Date:  2014-12-05       Impact factor: 4.519

9.  Statistical methods for detecting differentially abundant features in clinical metagenomic samples.

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Journal:  PLoS Comput Biol       Date:  2009-04-10       Impact factor: 4.475

10.  Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer.

Authors:  Maria G Dominguez-Bello; Kassandra M De Jesus-Laboy; Nan Shen; Laura M Cox; Amnon Amir; Antonio Gonzalez; Nicholas A Bokulich; Se Jin Song; Marina Hoashi; Juana I Rivera-Vinas; Keimari Mendez; Rob Knight; Jose C Clemente
Journal:  Nat Med       Date:  2016-02-01       Impact factor: 53.440

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  210 in total

Review 1.  A Toxic Environment: a Growing Understanding of How Microbial Communities Affect Escherichia coli O157:H7 Shiga Toxin Expression.

Authors:  Erin M Nawrocki; Hillary M Mosso; Edward G Dudley
Journal:  Appl Environ Microbiol       Date:  2020-11-24       Impact factor: 4.792

Review 2.  The contrasting roles of inflammasomes in cancer.

Authors:  Qin He; Yu Fu; Dean Tian; Wei Yan
Journal:  Am J Cancer Res       Date:  2018-04-01       Impact factor: 6.166

3.  Exact variance component tests for longitudinal microbiome studies.

Authors:  Jing Zhai; Kenneth Knox; Homer L Twigg; Hua Zhou; Jin J Zhou
Journal:  Genet Epidemiol       Date:  2019-01-08       Impact factor: 2.135

4.  Considerations When Designing a Microbiome Study: Implications for Nursing Science.

Authors:  Katherine A Maki; Ana F Diallo; Mark B Lockwood; Alexis T Franks; Stefan J Green; Paule V Joseph
Journal:  Biol Res Nurs       Date:  2018-11-08       Impact factor: 2.522

5.  Model Colibactins Exhibit Human Cell Genotoxicity in the Absence of Host Bacteria.

Authors:  Emilee E Shine; Mengzhao Xue; Jaymin R Patel; Alan R Healy; Yulia V Surovtseva; Seth B Herzon; Jason M Crawford
Journal:  ACS Chem Biol       Date:  2018-11-20       Impact factor: 5.100

6.  The gut microbiota modulator berberine ameliorates collagen-induced arthritis in rats by facilitating the generation of butyrate and adjusting the intestinal hypoxia and nitrate supply.

Authors:  Mengfan Yue; Yu Tao; Yulai Fang; Xingpan Lian; Qin Zhang; Yufeng Xia; Zhifeng Wei; Yue Dai
Journal:  FASEB J       Date:  2019-08-19       Impact factor: 5.191

7.  Evolutionary and ecological consequences of gut microbial communities.

Authors:  Nancy A Moran; Howard Ochman; Tobin J Hammer
Journal:  Annu Rev Ecol Evol Syst       Date:  2019-08-29       Impact factor: 13.915

Review 8.  Regulation of inflammation by microbiota interactions with the host.

Authors:  J Magarian Blander; Randy S Longman; Iliyan D Iliev; Gregory F Sonnenberg; David Artis
Journal:  Nat Immunol       Date:  2017-07-19       Impact factor: 25.606

9.  The Underlying Ecological Processes of Gut Microbiota Among Cohabitating Retarded, Overgrown and Normal Shrimp.

Authors:  Jinbo Xiong; Wenfang Dai; Jinyong Zhu; Keshao Liu; Chunming Dong; Qiongfen Qiu
Journal:  Microb Ecol       Date:  2016-12-13       Impact factor: 4.552

10.  Preparing the bowel for surgery: rethinking the strategy.

Authors:  John C Alverdy; Benjamin D Shogan
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2019-12       Impact factor: 46.802

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