Literature DB >> 33772139

Preoperative immune landscape predisposes adverse outcomes in hepatocellular carcinoma patients with liver transplantation.

Sang-Ho Yoon1, Seo-Won Choi1, Suk Woo Nam2, Kyoung Bun Lee3, Jin-Wu Nam4,5,6.   

Abstract

Immune class in hepatocellular carcinoma (HCC) has been shown to possess immunogenic power; however, how preestablished immune landscapes in premalignant and early HCC stages impact the clinical outcomes of HCC patients remains unexplored. We sequenced bulk transcriptomes for 62 malignant tumor samples from a Korean HCC cohort in which 38 patients underwent total hepatectomy, as well as for 15 normal and 47 adjacent nontumor samples. Using in silico deconvolution of expression mixtures, 22 immune cell fractions for each sample were inferred, and validated with immune cell counting by immunohistochemistry. Cell type-specific immune signatures dynamically shifted from premalignant stages to the late HCC stage. Total hepatectomy patients displayed elevated immune infiltration and prolonged disease-free survival compared to the partial hepatectomy patients. However, patients who exhibited an infiltration of regulatory T cells (Tregs) during the pretransplantation period displayed a high risk of tumor relapse with suppressed immune responses, and pretreatment was a potential driver of Treg infiltration in the total hepatectomy group. Treg infiltration appeared to be independent of molecular classifications based on transcriptomic data. Our study provides not only comprehensive immune signatures in adjacent nontumor lesions and early malignant HCC stages but also clinical guidance for HCC patients who will undergo liver transplantation.

Entities:  

Year:  2021        PMID: 33772139      PMCID: PMC7997876          DOI: 10.1038/s41698-021-00167-2

Source DB:  PubMed          Journal:  NPJ Precis Oncol        ISSN: 2397-768X


  60 in total

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Journal:  Bioinformatics       Date:  2013-11-13       Impact factor: 6.937

2.  Global quantification of mammalian gene expression control.

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3.  The American Joint Committee on Cancer: the 7th edition of the AJCC cancer staging manual and the future of TNM.

Authors:  Stephen B Edge; Carolyn C Compton
Journal:  Ann Surg Oncol       Date:  2010-06       Impact factor: 5.344

4.  Percutaneous radiofrequency ablation of hepatocellular carcinoma as a bridge to liver transplantation.

Authors:  David S K Lu; Nam C Yu; Steven S Raman; Charles Lassman; Myron J Tong; Carolyn Britten; Francisco Durazo; Sammy Saab; Steven Han; Richard Finn; Jonathan R Hiatt; Ronald W Busuttil
Journal:  Hepatology       Date:  2005-05       Impact factor: 17.425

5.  The Genotype-Tissue Expression (GTEx) project.

Authors: 
Journal:  Nat Genet       Date:  2013-06       Impact factor: 38.330

6.  FOXP3+ regulatory T cells affect the development and progression of hepatocarcinogenesis.

Authors:  Noritoshi Kobayashi; Nobuyoshi Hiraoka; Wataru Yamagami; Hidenori Ojima; Yae Kanai; Tomoo Kosuge; Atsushi Nakajima; Setsuo Hirohashi
Journal:  Clin Cancer Res       Date:  2007-02-01       Impact factor: 12.531

7.  Regulatory T Cells Exhibit Distinct Features in Human Breast Cancer.

Authors:  George Plitas; Catherine Konopacki; Kenmin Wu; Paula D Bos; Monica Morrow; Ekaterina V Putintseva; Dmitriy M Chudakov; Alexander Y Rudensky
Journal:  Immunity       Date:  2016-11-15       Impact factor: 31.745

8.  A flexible R package for nonnegative matrix factorization.

Authors:  Renaud Gaujoux; Cathal Seoighe
Journal:  BMC Bioinformatics       Date:  2010-07-02       Impact factor: 3.169

9.  Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues.

Authors:  Idit Kosti; Nishant Jain; Dvir Aran; Atul J Butte; Marina Sirota
Journal:  Sci Rep       Date:  2016-05-04       Impact factor: 4.379

10.  Comprehensive analysis of normal adjacent to tumor transcriptomes.

Authors:  Dvir Aran; Roman Camarda; Justin Odegaard; Hyojung Paik; Boris Oskotsky; Gregor Krings; Andrei Goga; Marina Sirota; Atul J Butte
Journal:  Nat Commun       Date:  2017-10-20       Impact factor: 14.919

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  4 in total

1.  Preoperative immune landscape predisposes adverse outcomes in hepatocellular carcinoma patients with liver transplantation.

Authors:  Sang-Ho Yoon; Seo-Won Choi; Suk Woo Nam; Kyoung Bun Lee; Jin-Wu Nam
Journal:  NPJ Precis Oncol       Date:  2021-03-26

2.  Single-Cell Transcriptomics Reveals the Expression of Aging- and Senescence-Associated Genes in Distinct Cancer Cell Populations.

Authors:  Dominik Saul; Robyn Laura Kosinsky
Journal:  Cells       Date:  2021-11-11       Impact factor: 6.600

3.  Integrating the Epigenome and Transcriptome of Hepatocellular Carcinoma to Identify Systematic Enhancer Aberrations and Establish an Aberrant Enhancer-Related Prognostic Signature.

Authors:  Peng Huang; Bin Zhang; Junsheng Zhao; Ming D Li
Journal:  Front Cell Dev Biol       Date:  2022-03-01

4.  Comprehensive characterization of enhancer RNA in hepatocellular carcinoma reveals three immune subtypes with implications for immunotherapy.

Authors:  Xiaoyun Bu; Shuang Liu; Dongsheng Wen; Anna Kan; Yujie Xu; Xuanjia Lin; Ming Shi
Journal:  Mol Ther Oncolytics       Date:  2022-07-06       Impact factor: 6.311

  4 in total

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