Literature DB >> 33764624

A new l-arginine oxidase engineered from l-glutamate oxidase.

Yoshika Yano1, Shinsaku Matsuo1, Nanako Ito2, Takashi Tamura1, Hitoshi Kusakabe3, Kenji Inagaki1, Katsumi Imada2.   

Abstract

The alternation of substrate specificity expands the application range of enzymes in industrial, medical, and pharmaceutical fields. l-Glutamate oxidase (LGOX) from Streptomyces sp. X-119-6 catalyzes the oxidative deamination of l-glutamate to produce 2-ketoglutarate with ammonia and hydrogen peroxide. LGOX shows strict substrate specificity for l-glutamate. Previous studies on LGOX revealed that Arg305 in its active site recognizes the side chain of l-glutamate, and replacement of Arg305 by other amino acids drastically changes the substrate specificity of LGOX. Here we demonstrate that the R305E mutant variant of LGOX exhibits strict specificity for l-arginine. The oxidative deamination activity of LGOX to l-arginine is higher than that of l-arginine oxidase form from Pseudomonas sp. TPU 7192. X-ray crystal structure analysis revealed that the guanidino group of l-arginine is recognized not only by Glu305 but also Asp433, Trp564, and Glu617, which interact with Arg305 in wild-type LGOX. Multiple interactions by these residues provide strict specificity and high activity of LGOX R305E toward l-arginine. LGOX R305E is a thermostable and pH stable enzyme. The amount of hydrogen peroxide, which is a byproduct of oxidative deamination of l-arginine by LGOX R305E, is proportional to the concentration of l-arginine in a range from 0 to 100 μM. The linear relationship is maintained around 1 μM of l-arginine. Thus, LGOX R305E is suitable for the determination of l-arginine.
© 2021 The Protein Society.

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Keywords:  zzm321990l-arginine oxidase; zzm321990l-glutamate oxidase; crystal structure; modification of substrate specificity; substrate recognition

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Year:  2021        PMID: 33764624      PMCID: PMC8040864          DOI: 10.1002/pro.4070

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  29 in total

Review 1.  Arginine revisited: minireview article.

Authors:  M A Grillo; S Colombatto
Journal:  Amino Acids       Date:  2004-04-08       Impact factor: 3.520

2.  Purification, partial characterization, crystallization and structural determination of AHP-LAAO, a novel L-amino-acid oxidase with cell apoptosis-inducing activity from Agkistrodon halys pallas venom.

Authors:  Hongmin Zhang; Maikun Teng; Liwen Niu; Yubao Wang; Yuzhen Wang; Qun Liu; Qingqiu Huang; Quan Hao; Yuhui Dong; Peng Liu
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-04-21

3.  Advances in non-snake venom L-amino acid oxidase.

Authors:  Zhiliang Yu; Hua Qiao
Journal:  Appl Biochem Biotechnol       Date:  2012-02-26       Impact factor: 2.926

Review 4.  The clinical pharmacology of L-arginine.

Authors:  R H Böger; S M Bode-Böger
Journal:  Annu Rev Pharmacol Toxicol       Date:  2001       Impact factor: 13.820

5.  Arg305 of Streptomyces L-glutamate oxidase plays a crucial role for substrate recognition.

Authors:  Tomohiro Utsumi; Jiro Arima; Chika Sakaguchi; Takashi Tamura; Chiduko Sasaki; Hitoshi Kusakabe; Shigetoshi Sugio; Kenji Inagaki
Journal:  Biochem Biophys Res Commun       Date:  2011-12-16       Impact factor: 3.575

Review 6.  L-amino acid oxidase as biocatalyst: a dream too far?

Authors:  Loredano Pollegioni; Paolo Motta; Gianluca Molla
Journal:  Appl Microbiol Biotechnol       Date:  2013-11       Impact factor: 4.813

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Recombinant expression, biochemical characterization and stabilization through proteolysis of an L-glutamate oxidase from Streptomyces sp. X-119-6.

Authors:  Jiro Arima; Takashi Tamura; Hitoshi Kusakabe; Makoto Ashiuchi; Toshiharu Yagi; Hidehiko Tanaka; Kenji Inagaki
Journal:  J Biochem       Date:  2003-12       Impact factor: 3.387

Review 9.  Enzymes of arginine metabolism.

Authors:  Sidney M Morris
Journal:  J Nutr       Date:  2004-10       Impact factor: 4.798

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
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  1 in total

1.  A new l-arginine oxidase engineered from l-glutamate oxidase.

Authors:  Yoshika Yano; Shinsaku Matsuo; Nanako Ito; Takashi Tamura; Hitoshi Kusakabe; Kenji Inagaki; Katsumi Imada
Journal:  Protein Sci       Date:  2021-04-03       Impact factor: 6.725

  1 in total

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