Literature DB >> 33750853

Field-deployable, rapid diagnostic testing of saliva for SARS-CoV-2.

Shan Wei1, Hemant Suryawanshi1, Alexandre Djandji1, Esther Kohl1, Stephanie Morgan1, Eldad A Hod1,2, Susan Whittier1,2, Kevin Roth1,2, Raymond Yeh1, Juan Carlos Alejaldre1,2, Elaine Fleck1,2, Stephen Ferrara1,2, Daniel Hercz3, David Andrews3, Lilly Lee3, Kristopher A Hendershot3, Joshua Goldstein3, Yousin Suh1, Mahesh Mansukhani1,2, Zev Williams4,5.   

Abstract

To safely re-open economies and prevent future outbreaks, rapid, frequent, point-of-need, SARS-CoV-2 diagnostic testing is necessary. However, existing field-deployable COVID-19 testing methods require the use of uncomfortable swabs and trained providers in PPE, while saliva-based methods must be transported to high complexity laboratories for testing. Here, we report the development and clinical validation of High-Performance Loop-mediated isothermal Amplification (HP-LAMP), a rapid, saliva-based, SARS-CoV-2 test with a limit of detection of 1.4 copies of virus per µl of saliva and a sensitivity and specificity with clinical samples of > 96%, on par with traditional RT-PCR based methods using swabs, but can deliver results using only a single fluid transfer step and simple heat block. Testing of 120 patient samples in 40 pools comprised of 5 patient samples each with either all negative or a single positive patient sample was 100% accurate. Thus, HP-LAMP may enable rapid and accurate results in the field using saliva, without need of a high-complexity laboratory.

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Year:  2021        PMID: 33750853      PMCID: PMC7943555          DOI: 10.1038/s41598-021-84792-8

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  19 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  The human genome browser at UCSC.

Authors:  W James Kent; Charles W Sugnet; Terrence S Furey; Krishna M Roskin; Tom H Pringle; Alan M Zahler; David Haussler
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

3.  Temporal dynamics in viral shedding and transmissibility of COVID-19.

Authors:  Xi He; Eric H Y Lau; Peng Wu; Xilong Deng; Jian Wang; Xinxin Hao; Yiu Chung Lau; Jessica Y Wong; Yujuan Guan; Xinghua Tan; Xiaoneng Mo; Yanqing Chen; Baolin Liao; Weilie Chen; Fengyu Hu; Qing Zhang; Mingqiu Zhong; Yanrong Wu; Lingzhai Zhao; Fuchun Zhang; Benjamin J Cowling; Fang Li; Gabriel M Leung
Journal:  Nat Med       Date:  2020-04-15       Impact factor: 53.440

4.  Direct diagnostic testing of SARS-CoV-2 without the need for prior RNA extraction.

Authors:  Shan Wei; Esther Kohl; Alexandre Djandji; Stephanie Morgan; Susan Whittier; Mahesh Mansukhani; Eldad Hod; Mary D'Alton; Yousin Suh; Zev Williams
Journal:  Sci Rep       Date:  2021-01-28       Impact factor: 4.379

5.  Clinical Course and Molecular Viral Shedding Among Asymptomatic and Symptomatic Patients With SARS-CoV-2 Infection in a Community Treatment Center in the Republic of Korea.

Authors:  Seungjae Lee; Tark Kim; Eunjung Lee; Cheolgu Lee; Hojung Kim; Heejeong Rhee; Se Yoon Park; Hyo-Ju Son; Shinae Yu; Jung Wan Park; Eun Ju Choo; Suyeon Park; Mark Loeb; Tae Hyong Kim
Journal:  JAMA Intern Med       Date:  2020-11-01       Impact factor: 21.873

6.  Rapid detection of novel coronavirus/Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) by reverse transcription-loop-mediated isothermal amplification.

Authors:  Laura E Lamb; Sarah N Bartolone; Elijah Ward; Michael B Chancellor
Journal:  PLoS One       Date:  2020-06-12       Impact factor: 3.240

7.  An alternative workflow for molecular detection of SARS-CoV-2 - escape from the NA extraction kit-shortage, Copenhagen, Denmark, March 2020.

Authors:  Anna S Fomsgaard; Maiken Worsøe Rosenstierne
Journal:  Euro Surveill       Date:  2020-04

8.  A Rapid, Simple, Inexpensive, and Mobile Colorimetric Assay COVID-19-LAMP for Mass On-Site Screening of COVID-19.

Authors:  Franklin Wang-Ngai Chow; Tony Tat-Yin Chan; Anthony Raymond Tam; Suhui Zhao; Weiming Yao; Joshua Fung; Flora Ka-Kei Cheng; George Chi-Shing Lo; Stella Chu; Kam Leng Aw-Yong; James Yat-Man Tang; Chi-Ching Tsang; Hayes Kam-Hei Luk; Antonio Cheuk-Pui Wong; Kenneth Sze-Ming Li; Longchao Zhu; Zirong He; Emily Wan Ting Tam; Tom Wai-Hin Chung; Sally Cheuk Ying Wong; Tak-Lun Que; Kitty Sau-Chun Fung; David Christopher Lung; Alan Ka-Lun Wu; Ivan Fan-Ngai Hung; Patrick Chiu-Yat Woo; Susanna Kar-Pui Lau
Journal:  Int J Mol Sci       Date:  2020-07-29       Impact factor: 5.923

9.  Massive and rapid COVID-19 testing is feasible by extraction-free SARS-CoV-2 RT-PCR.

Authors:  Ioanna Smyrlaki; Martin Ekman; Antonio Lentini; Nuno Rufino de Sousa; Natali Papanicolaou; Martin Vondracek; Johan Aarum; Hamzah Safari; Shaman Muradrasoli; Antonio Gigliotti Rothfuchs; Jan Albert; Björn Högberg; Björn Reinius
Journal:  Nat Commun       Date:  2020-09-23       Impact factor: 14.919

10.  Saliva or Nasopharyngeal Swab Specimens for Detection of SARS-CoV-2.

Authors:  Anne L Wyllie; John Fournier; Arnau Casanovas-Massana; Melissa Campbell; Maria Tokuyama; Pavithra Vijayakumar; Joshua L Warren; Bertie Geng; M Catherine Muenker; Adam J Moore; Chantal B F Vogels; Mary E Petrone; Isabel M Ott; Peiwen Lu; Arvind Venkataraman; Alice Lu-Culligan; Jonathan Klein; Rebecca Earnest; Michael Simonov; Rupak Datta; Ryan Handoko; Nida Naushad; Lorenzo R Sewanan; Jordan Valdez; Elizabeth B White; Sarah Lapidus; Chaney C Kalinich; Xiaodong Jiang; Daniel J Kim; Eriko Kudo; Melissa Linehan; Tianyang Mao; Miyu Moriyama; Ji E Oh; Annsea Park; Julio Silva; Eric Song; Takehiro Takahashi; Manabu Taura; Orr-El Weizman; Patrick Wong; Yexin Yang; Santos Bermejo; Camila D Odio; Saad B Omer; Charles S Dela Cruz; Shelli Farhadian; Richard A Martinello; Akiko Iwasaki; Nathan D Grubaugh; Albert I Ko
Journal:  N Engl J Med       Date:  2020-08-28       Impact factor: 176.079

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  11 in total

Review 1.  Strategies That Facilitate Extraction-Free SARS-CoV-2 Nucleic Acid Amplification Tests.

Authors:  David J Delgado-Diaz; Dhanasekaran Sakthivel; Hanh H T Nguyen; Khashayar Farrokzhad; William Hopper; Charles A Narh; Jack S Richards
Journal:  Viruses       Date:  2022-06-15       Impact factor: 5.818

2.  Evaluation of saliva as a complementary technique to the diagnosis of COVID-19: a systematic review.

Authors:  K Sagredo-Olivares; C Morales-Gómez; J Aitken-Saavedra
Journal:  Med Oral Patol Oral Cir Bucal       Date:  2021-07-01

Review 3.  CRISPR-based detection of SARS-CoV-2: A review from sample to result.

Authors:  Reza Nouri; Zifan Tang; Ming Dong; Tianyi Liu; Aneesh Kshirsagar; Weihua Guan
Journal:  Biosens Bioelectron       Date:  2021-01-21       Impact factor: 12.545

4.  Implementation of a Rapid RT-LAMP Saliva-Based SARS-CoV-2 Testing Program in the Workplace.

Authors:  Bradley W M Cook; Kaitlyn Kobasa; Marielou Tamayo; Natasha Theriault; Diane Gordon Pappas; Steven S Theriault
Journal:  Diagnostics (Basel)       Date:  2022-02-12

5.  Performances of rapid and connected salivary RT-LAMP diagnostic test for SARS-CoV-2 infection in ambulatory screening.

Authors:  Francisco Santos Schneider; Laurence Molina; Marie-Christine Picot; Nicolas L'Helgoualch; Julien Espeut; Pierre Champigneux; Mellis Alali; Julie Baptiste; Lise Cardeur; Christophe Carniel; Martin Davy; Daniel Dedisse; Benjamin Dubuc; Hugo Fenech; Vincent Foulongne; Carole Fruchart Gaillard; Florence Galtier; Alain Makinson; Grégory Marin; Raissa Medina Santos; David Morquin; Alimata Ouedraogo; Alexandra Prieux Lejeune; Marine Quenot; Pierre Keiflin; Francisco Checa Robles; Carolina Rodrigues Rego; Nicolas Salvetat; Charline Trento; Diana Vetter; Franck Molina; Jacques Reynes
Journal:  Sci Rep       Date:  2022-02-18       Impact factor: 4.379

Review 6.  CRISPR detectives against SARS-CoV-2: a major setback against COVID-19 blowout.

Authors:  Rahul Gupta; Tawsif Ahmed Kazi; Dhritiman Dey; Arijit Ghosh; V Ravichandiran; Snehasikta Swarnakar; Syamal Roy; Swadesh Ranjan Biswas; Dipanjan Ghosh
Journal:  Appl Microbiol Biotechnol       Date:  2021-09-20       Impact factor: 4.813

7.  Assessment of a Smartphone-Based Loop-Mediated Isothermal Amplification Assay for Detection of SARS-CoV-2 and Influenza Viruses.

Authors:  Douglas M Heithoff; Lucien Barnes; Scott P Mahan; Gary N Fox; Katherine E Arn; Sarah J Ettinger; Andrew M Bishop; Lynn N Fitzgibbons; Jeffrey C Fried; David A Low; Charles E Samuel; Michael J Mahan
Journal:  JAMA Netw Open       Date:  2022-01-04

8.  Portable real-time colorimetric LAMP-device for rapid quantitative detection of nucleic acids in crude samples.

Authors:  G Papadakis; A K Pantazis; N Fikas; S Chatziioannidou; V Tsiakalou; K Michaelidou; V Pogka; M Megariti; M Vardaki; K Giarentis; J Heaney; E Nastouli; T Karamitros; A Mentis; A Zafiropoulos; G Sourvinos; S Agelaki; E Gizeli
Journal:  Sci Rep       Date:  2022-03-08       Impact factor: 4.379

9.  Saliva versus Upper Respiratory Swabs: Equivalent for Severe Acute Respiratory Syndrome Coronavirus 2 University Screening while Saliva Positivity Is Prolonged After Symptom Onset in Coronavirus Disease 2019 Hospitalized Patients.

Authors:  Farah El-Sharkawy; Chi Ngong Tang; Ayannah S Fitzgerald; Layla A Khatib; Jevon Graham-Wooten; Laurel Glaser; Ronald G Collman; Vivianna M Van Deerlin; Sarah E Herlihy
Journal:  J Mol Diagn       Date:  2022-04-27       Impact factor: 5.341

10.  Evaluating Saliva Sampling with Reverse Transcription Loop-mediated Isothermal Amplification to Improve Access to SARS-CoV-2 Diagnosis in Low-Resource Settings.

Authors:  Suwarti Suwarti; Sabighoh Zanjabila; Yacobus Da Costa; Claus Bogh; Decy Subekti; Jeny Jeny; Ayu Madri Dewi; Nunung Nuraeni; Mutia Rahardjani; Iqbal Elyazar; Erni J Nelwan; Anuraj H Shankar; J Kevin Baird; Raph L Hamers
Journal:  Am J Trop Med Hyg       Date:  2022-07-05       Impact factor: 3.707

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