| Literature DB >> 33748618 |
Akbar Ali1, Muhammad Khalid2, Muhammad Nawaz Tahir3, Muhammad Imran4, Muhammad Ashfaq3, Riaz Hussain5, Mohammed A Assiri4,6, Imran Khan3.
Abstract
Two heterocyclic compounds named 2,6-diaminopyrimidin-4-ylnaphthalene-2-sulfonate (A) and 2,6-diaminopyrimidin-4-yl4-methylbenzene sulfonate (B) were synthesized. The structures of heterocyclic molecules were established by the X-ray crystallographic technique, which showed several noncovalent interactions as N···H···N, N···H···O, and C-H···O bonding and parallel offset stacking interaction. Hydrogen-bonding interactions were further explored by the Hirshfeld surface (HS) analysis. Nonlinear optical (NLO) and natural bond orbital (NBO) properties were calculated utilizing the B3LYP/6-311G(d,p) level. Frontier molecular orbitals (FMOs) and molecular electrostatic potential (MEP) were calculated utilizing the time-dependent density functional theory (TD-DFT) at the same level. The NBO analysis showed that the molecular stabilities of compounds A and B were attributed to their large stabilization energy values. The second hyperpolarizability (γtot) values for A and B were obtained as 3.7 × 104 and 2.7 × 104 au, respectively. The experimental X-ray crystallographic and theoretical structural parameters of A and B were found to be in close correspondence. Both the molecules reveal substantial NLO responses that can be significant for their utilization in advanced applications.Entities:
Year: 2021 PMID: 33748618 PMCID: PMC7970555 DOI: 10.1021/acsomega.0c06323
Source DB: PubMed Journal: ACS Omega ISSN: 2470-1343
Figure 1Functionalized pyrimidine compounds with their pharmacological potential.
Figure 2Synthetic pathway of O-aryalsulfonylation of 2,6-diaminopyrimidin-4-ol.
Experimental Details of Entitled Compounds
| compounds | ||
|---|---|---|
| CCDC | 1995364 | 1995365 |
| chemical formula | C14H12N4O3S | C11H12N4O3S |
| molecular weight (g/cm3) | 316.34 | 280.31 |
| crystal system | monoclinic | monoclinic |
| space group | ||
| 296 K | 296 K | |
| 13.979 (3), 7.7541 (13), 13.345 (2) | 12.573 (2), 7.7930 (9), 13.395 (3) | |
| α, β, γ (deg) | 90, 102.289 (8), 90 | 90, 104.610 (6), 90 |
| 1413.4 (5) | 1270.0 (4) | |
| 4 | 4 | |
| density (calculated) | 1.487 Mg/m3 | 1.466 Mg/m3 |
| 656 | 584 | |
| type of radiation used | Mo Kα | Mo Kα |
| wavelength (λ) | 0.71073 Å | 0.71073 Å |
| μ (1/mm) | 0.25 | 0.27 |
| size of crystal (mm) | 0.42 × 0.36 × 0.20 | 0.38 × 0.30 × 0.16 |
| data collection | ||
| diffractometer | Bruker APEX-II CCD | diffractometer |
| absorption correction | multiscan (SADABS, Bruker, 2007) | |
| no. of measured, independent,
and observed [ | 8949, 3062, 1999 | 8086, 2751, 1912 |
| 0.061 | 0.065 | |
| data collection range of θ (deg) | 2.983–26.990 | 3.050–26.990 |
| index ranges | –16 ≤ | –16 ≤ |
| (sin θ/λ)max (Å–1) | 0.639 | 0.639 |
| refinement | ||
| 0.055, 0.139, 1.02 | 0.055, 0.147, 1.05 | |
| no. of reflections | 3062 | 2751 |
| no. of parameters | 199 | 173 |
| treatment of H-atoms | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å–3) | 0.30, −0.40 | 0.25, −0.33 |
Figure 3ORTEP diagrams of A and B drawn at a probability level of 50%. Hydrogen atoms are indicated by small circles of arbitrary radii.
Figure 4Packing illustration of molecules A and B. The H-atoms not involved in H-bonding are omitted for clarity.
Hydrogen-Bond Geometric Parameters (Å, deg) for A and Ba
| D–H···A | D–H | H···A | D···A | <(D–H···A)° | |
|---|---|---|---|---|---|
| N3···H3A···N1i | 0.86 | 2.46 | 3.172 (3) | 141 | |
| N3···H3B···O1ii | 0.86 | 2.20 | 3.022 (3) | 159 | |
| N4···H4A···N2iii | 0.86 | 2.23 | 3.054 (3) | 161 | |
| N4···H4B···O3iv | 0.86 | 2.56 | 3.333 (3) | 150 | |
| C4···H4···O1ii | 0.93 | 2.65 | 3.374 (3) | 135 | |
| N3···H3A···N1v | 0.86 | 2.50 | 3.208 (3) | 140 | |
| N3···H3B···O1vi | 0.86 | 2.23 | 3.043 (3) | 157 | |
| N4···H4B···N2vii | 0.86 | 2.24 | 3.071 (3) | 161 | |
| N4···H4A···O3viii | 0.86 | 2.56 | 3.329 (3) | 149 | |
| C4···H4···O1vi | 0.93 | 2.66 | 3.379 (3) | 135 |
Symmetry codes: (i) x, −y – 1/2, z – 1/2; (ii) x, −y + 1/2, z – 1/2; (iii) −x + 1, −y – 1, −z + 1; (iv) −x + 1, y – 1/2, −z + 3/2; (v) x, −y – 1/2, z + 1/2; (vi) x, −y + 1/2, z + 1/2; (vii) −x, y – 1/2, −z – 1/2; (viii) −x, −y – 1, −z.
Figure 5Parallel offset stacking interaction of A and B where the distances are presented in angstrom. The H-atoms are not shown for clarity.
Calculated Energies (E) via DFT for Compounds A and B
| MO(s) | Δ | Δ | ||
|---|---|---|---|---|
| HOMO | –6.174 | 4.198 | –6.004 | 4.667 |
| LUMO | –1.976 | –1.337 | ||
| HOMO – 1 | –6.693 | 5.693 | –6.900 | 6.045 |
| LUMO + 1 | –1.347 | –0.855 | ||
| HOMO – 2 | –7.077 | 6.420 | –7.032 | 6.937 |
| LUMO + 2 | –0.657 | –0.095 | ||
E, energy; ΔE (eV) = ELUMO – EHOMO; MO, molecular orbital.
Figure 6Frontier molecular orbitals of A and B, in electronvolts.
Dipole Polarizability and Second Hyperpolarizabilities with Their Contributing Tensor (au) of A and B
| dipole
polarizability | second
hyperpolarizability | ||||
|---|---|---|---|---|---|
| 267.146 | 246.650 | γX | 25.49 | 19.90 | |
| 206.579 | 161.732 | γY | 8.151 | 4.981 | |
| 157.776 | 128.105 | γ | 3.418 | 1.799 | |
| ⟨α⟩ | 210.5 | 178.8 | γtot | 3.7 | 2.7 |
Figure 7MEPs and the color schemes of A and B.