Muhammad Ashfaq1, Muhammad Khalid2, Muhammad Nawaz Tahir1, Akbar Ali3, Muhammad Nadeem Arshad4,5, Abdullah M Asiri4,5. 1. Department of Physics, University of Sargodha, Sargodha 40100, Pakistan. 2. Department of Chemistry, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan 64200, Pakistan. 3. Department of Chemistry, Government College University Faisalabad, Faisalabad 38000, Pakistan. 4. Chemistry Department, Faculty of Science, King Abdulaziz University, Jeddah 21589 P.O. Box 80203, Saudi Arabia. 5. Center of Excellence for Advanced Material Research (CEAMR), King Abdulaziz University, Jeddah 21589 P.O. Box 80203, Saudi Arabia.
Abstract
This investigation is focused on the synthesis of two halo-functionalized crystalline Schiff base (imine) compounds: (E)-2-methoxy-6-(((3-(trifluoromethyl)phenyl)imino)methyl)phenol (MFIP) and (E)-1-(((2-fluorophenyl)imino)methyl)naphthalen-2-ol (FPIN) by the condensation reaction of substituted benzaldehydes and substituted aniline. The crystal structures of MFIP and FPIN were determined unambiguously by single-crystal X-ray diffraction (SC-XRD) studies. Intermolecular interactions and the role of fluorine atoms in the stabilization of the crystal packing are explored for both compounds using Hirshfeld surface analysis. Accompanied with experimental studies, quantum chemical calculations were also performed for comprehensive structure elucidation at the M06/6-311G(d,p) level of theory. A comparison of experimental and density functional theory results for geometrical parameters exhibited excellent agreement. Interestingly, Frontier molecular orbitals and natural bond orbital (NBO) findings revealed that intramolecular charge transfer and hyper-conjugation interactions had played a significant role to stabilize the molecules. Both compounds exhibited a relatively larger value of hardness with a smaller global softness, which, as proposed by the SC-XRD and NBO study, shows a higher stability. Nonlinear optical (NLO) findings showed that FPIN manifested a larger value of linear polarizability (<a> = 293.06 a.u.) and second-order hyperpolarizability (<γ> = 3.31 × 105 a.u.) than MFIP (<a> = 252.42 and <γ> = 2.08 × 105 a.u.) due to an extended conjugation. The above-mentioned findings of the entitled compounds may play a crucial role in NLO applications.
This investigation is focused on the synthesis of two halo-functionalized crystalline Schiff base (imine) compounds: (E)-2-methoxy-6-(((3-(trifluoromethyl)phenyl)imino)methyl)phenol (MFIP) and (E)-1-(((2-fluorophenyl)imino)methyl)naphthalen-2-ol (FPIN) by the condensation reaction of substituted benzaldehydes and substituted aniline. The crystal structures of MFIP and FPIN were determined unambiguously by single-crystal X-ray diffraction (SC-XRD) studies. Intermolecular interactions and the role of fluorine atoms in the stabilization of the crystal packing are explored for both compounds using Hirshfeld surface analysis. Accompanied with experimental studies, quantum chemical calculations were also performed for comprehensive structure elucidation at the M06/6-311G(d,p) level of theory. A comparison of experimental and density functional theory results for geometrical parameters exhibited excellent agreement. Interestingly, Frontier molecular orbitals and natural bond orbital (NBO) findings revealed that intramolecular charge transfer and hyper-conjugation interactions had played a significant role to stabilize the molecules. Both compounds exhibited a relatively larger value of hardness with a smaller global softness, which, as proposed by the SC-XRD and NBO study, shows a higher stability. Nonlinear optical (NLO) findings showed that FPIN manifested a larger value of linear polarizability (<a> = 293.06 a.u.) and second-order hyperpolarizability (<γ> = 3.31 × 105 a.u.) than MFIP (<a> = 252.42 and <γ> = 2.08 × 105 a.u.) due to an extended conjugation. The above-mentioned findings of the entitled compounds may play a crucial role in NLO applications.
Synthesis of new crystalline organic compounds and their computational
exploration are a significant and a well-recognized research area
in modern times. Schiff bases/imines are a substantial class of organic
compounds achieved via condensation of carbonyl compounds (aldehydes
or ketones) and primary amines to generate an azomethine (−C=N−)
functionality.[1] Compounds of this class
have shown significant applications in the field of analytical, coordination,
and pharmaceutical chemistry. The compounds having imine/azomethine
(−C=N−) functionality have been recognized as
valuable ligands in the field of coordination chemistry in order to
prepare various metal complexes of valuable interest.[2] Compounds having a Schiff base feature have been explored
for their potential applications in the field of medicinal chemistry,
and various members of this class are found to possess valuable biological
activities such as anticancer,[3] analgesic
and anti-inflammatory,[4] anti-tubercular,[5] antimicrobial,[6] anthelmintic,[7] antioxidant,[8] anticonvulsant,[9] and so forth. Schiff bases/imines may also exist
in the form of zwitterion or inner salt that play a key role to contribute
to the physical properties such as enhancing permeability and solubility
of these compounds that are highly demanding characteristics in the
field of drug designing.[10] In the asymmetric
organic synthesis (where chiral secondary amines are used as organic
catalysts) and multi-component reaction chemistry such as the Ugi
four-component reaction, the reaction began with the formation of
iminium ion/imines/Schiff bases and is considered as the key intermediate
for useful transformations, and they play a vital role in the production
of alkaloids and other nitrogen-based heterocycles.[11] Recently, overlapping of diverse research fields for the
exploration, investigation, and justification of the key electronic
features of the newly manufactured compounds has been getting valuable
recognition. In this scenario, synthetic organic chemistry is well
supported by the DFT calculations in order to find the kinetic and
structural properties. DFT calculations are highly acknowledged as
an influential contrivance for the exploration of key electronic features
of the newly synthesized organic compounds such as nonlinear optical
properties, non-covalent interactions, and so forth.[12] The non-covalent interactive capacity of organic compounds
predicted by DFT calculations plays a significant role in the pharmacological
potential of these chemical building blocks.[13]Imines are also a class of organic chemical architecture that
has
been reconnoitered by DFT analysis in order to investigate their crucial
electronic properties such as non-covalent interaction, nonlinear
optical properties, and so forth.[14] The
computational tool has also been applied to the imine-based zwitterion
compounds in order to explore its stability (supported by NBO investigations)
accompanied with reactivity in the redox process.[15]Herein, we are presenting our findings toward the
synthesis, DFT
study, and crystal packing of the crystalline imine/Schiff base compounds:
(E)-2-methoxy-6-(((3-(trifluoromethyl) phenyl)imino)methyl)phenol
(MFIP) and (E)-1-(((2-fluorophenyl)imino)methyl)naphthalen-2-ol
(FPIN).
Results and Discussion
Exploration of the Crystal Structure of MFIP
and FPIN
SC-XRD characterization was performed for both compounds
and the Cambridge Structural Database confirmed the novelty of the
crystal structure of both compounds. Inspection related to the molecular
configuration and how the molecules are packed in both the crystals
was carried out thoroughly. Table S1 provides
the experimental details related to SC-XRD, whereas Table specifies the comparison of
selected bond lengths and bond angles determined by SC-XRD and DFT
studies of both compounds. In the literature, the effect of phenyl
and naphthyl groups on the conformational properties of nitrogenated
compounds is found, which is kept in view while describing the crystal
structure of FPIN and MFIP.[16]
Table 1
Comparison of Selected Bond Lengths
(Å) and Bond Angles (°) of MFIP and FPIN by SC-XRD and DFT
bond
(selected) lengths in MFIP
bond
(selected) lengths in FPIN
SC-XRD
DFT
SC-XRD
DFT
N1–C8
1.275 (3)
1.283
N1–C11
1.286 (4)
1.287
N1–C9
1.416 (3)
1.399
N1–C12
1.412 (4)
1.393
O1–C2
1.353 (3)
1.326
O1–C1
1.325 (4)
1.321
O2–C3
1.371 (3)
1.348
F1–C13
1.353 (4)
1.333
O2–C7
1.420 (4)
1.404
C1–C10
1.400 (4)
1.404
C15–F1A
1.336 (2)
1.333
C15–F2A
1.340 (2)
1.338
C15–F3A
1.352 (2)
1.338
The title Schiff base compound MFIP (Figure a, Table S1) has a phenol tautomeric form as evident from the bond lengths
O1–C2 and N1–C8 of 1.353 (3) and 1.275 (3) Å. O–H···N
intramolecular H-bonding stabilizes the molecular configuration to
form the pseudo-six-membered ring as found in a closely related crystal
structure.[17] The planarity of the o-cresol
group A (C1–C6/C8/O1) and p-toluidine group B (C9–C15/N1)
is clear by the root-mean-square (rms) deviation of 0.0049 of group
A and 0.0110 Å of group B. The dihedral angle between group A
and group B is 39.5 (9)°. The C-atom and O-atom of the methoxy
group C (C7/O2) are deviated by 0.2472 (5) and 0.0141 (3) Å from
the plane formed by group A, respectively. The atoms of the trifluoro
group are disordered over three sets of sites with the first or a
major part of almost 45%, second or middle part of 41%, and third
or minor part of 14%. The major part of the disordered trifluoro group
D (F1A/F2A/F3A) forms the dihedral angle of 5.1 (2)° with the
middle part E (F1B/F2B/F3B) and 5.7 (3)° with the minor part
F (F1C/F2C/F3C). The dihedral angles formed by groups D, E, and F
with the parent group B are 88.7 (6)°, 86.2 (8)°, and 85.6
(9)°, which indicates that the planes of the disordered parts
are almost perpendicular to the plane formed by atoms of group B.
The molecules of the title compounds are inter-connected through weak
non-classical H-bonding named as C–H···O to
make the C9 chain that runs along the c crystallographic
axis (Table ). The
fluorine atoms play an important role in the stabilization of the
crystal packing as these atoms are involved in C–H···F
bonding and interlink the molecules to make the C8 zigzag chain that
runs along the b crystallographic axis (Figure ). Aamer Saeed et
al.[18] efficiently explored the role of
C–H···F bonding in the stabilization of the
crystal packing of the crystal structures containing fluorine-substituted
phenyl rings. The chains of molecules along the c crystallographic axis are further strengthened by off-set π···π
stacking interactions (Figure ). The phenyl ring substituted by methoxy and hydroxyl groups
of a molecule located at the symmetric position is involved in off-set
π···π stacking with similar phenyl rings
of a neighboring molecule with symmetry 1/2–x, y, −1/2 + z. This is weak
interaction as the inter-centroid distance is 4.44 Å and 2.671
to 3.049 Å is the range of the ring off-set. The crystal packing
of MFIP is compared with very closely related crystal
structures found in the literature. The Cambridge structural database
search for Schiff-bases with one phenyl ring substituted by the hydroxyl
group on one end and, on the other end, a phenyl ring substituted
by the trifluoromethyl group is performed. This search gives numerous
crystal structures that are relevant to MFIP. Out of
the relevant structures, three most closely related crystal structures
are compared with the crystal structure of MFIP. Reference
codes are DUJNUS (containing a 4-methoxy-substituted
phenyl ring),[19]FUGWEK (containing
a 4-hydroxy-substituted phenyl ring),[20] and YIFLEF (containing a 4-methyl-substituted phenyl
ring).[21] Like in MFIP, the
molecular configuration of the relevant structures is stabilized by
intra-molecular H-bonding (O–H···N). The crystal
packing of MFIP is different from the crystal packing
in DUJNUS, FUGWEK, and YIFLEF. In DUJNUS, C–H···O and C–H···π
interactions are the main aspects of the crystal packing. In the crystal
packing of FUGWEK, strong H-bonding of type O–H···O
bonding is present. In the crystal packing of FUGWEK,
no significant intermolecular H-bonding is present, but in MFIP, C–H···O and the off-set π···π
stacking interactions are the main aspects of the crystal packing.
Figure 1
ORTEP
diagrams of (a) MFIP and (b) FPIN that are
drawn at a 30% probability level. Small circles of arbitrary
radii represent H-atoms.
Table 2
Hydrogen-Bond Geometry (Å, °)
for MFIP and FPINa
MFIP
D—H···A
D—H
H···A
D···A
<(D—H···A)°
O1–H1···N1
0.82
1.89
2.618 (3)
147
C10–H10···O2i
0.93
2.52
3.441 (4)
170
C8–H8···F1Cii
0.93
2.48
3.39 (3)
166
FPIN
D—H···A
D—H
H···A
D···A
<(D—H···A)°
O1–H1···N1
0.82
1.79
2.510 (4)
146
C17–H17···O1iii
0.93
2.66
3.442 (4)
142
Symmetry codes: Symmetry code: (i)
−x+1/2, y, z+1/2; (ii) x, y–1/2, z+1/2; (iii) 1 + x, y, z.
Figure 2
Packing diagram of MFIP. Only H-atoms that are involved
in H-bonding are displayed.
Figure 3
Graphical
representation of the C9 zigzag chain and the off-set
π···π stacking interaction in the crystal
packing of MFIP. Distances shown are measured in Å.
ORTEP
diagrams of (a) MFIP and (b) FPIN that are
drawn at a 30% probability level. Small circles of arbitrary
radii represent H-atoms.Packing diagram of MFIP. Only H-atoms that are involved
in H-bonding are displayed.Graphical
representation of the C9 zigzag chain and the off-set
π···π stacking interaction in the crystal
packing of MFIP. Distances shown are measured in Å.Symmetry codes: Symmetry code: (i)
−x+1/2, y, z+1/2; (ii) x, y–1/2, z+1/2; (iii) 1 + x, y, z.The title Schiff
base compound FPIN (Figure b, Table S1) also has a phenol tautomeric form as evident from the bond
length O1–C1 and N1–C11 of values 1.325 (4) and 1.286
(4) Å, respectively. As in MFIP, the intramolecular
H-bonding (O–H···N) is responsible for the stabilization
of the molecular configuration for a tilted compound, but the intramolecular
H-bonding in FPIN is stronger as compared to the intramolecular
H-bonding in MFIP (Table ). This may be due to the strain produced by the trifluoromethyl
group attached to the phenyl ring in MFIP. The planarity
of 3-methylnaphthalen-2-ol group A (C1–C11/O1) and 2-(iminomethyl)-6-methoxyphenol
group B (C12–C17/N1/F1) is clear by the rms deviation of 0.0156
Å for group A and 0.0083 Å for group B. The dihedral angle
between groups A and B is 38.3°.[4] As
in MFIP, C–H···O bonding connects
the molecules of FPIN. However, in contrast to the C9
chains along the c-axis in MFIP, infinite
C8 chains are formed in FPIN that run along the a crystallographic axis (Figure ). In MFIP, the hydroxyl group
does not form any intermolecular H-bond, whereas in FPIN, the hydroxyl group participates not only in intramolecular but
also in intermolecular H-bonding. The crystal packing is further strengthened
by a weak interaction of type off-set π···π.
The (C1–C4/C9/C10) aromatic part of the naphthalene ring of
a molecule that is located at a symmetric position is involved in
off-set π···π stacking with a similar aromatic
part of the naphthalene ring of a neighboring molecule connected by
symmetry −1–x, −1/2 + y, −z (Figure S1). This interaction is very weak as the inter-centroid distance
is 4.42 Å with ring off-set ranges from 2.7135 to 4.3048 Å.
The Cambridge structural database search for Schiff-bases with a naphthalen-2-ol
ring at one end and a substituted phenyl ring on the other end is
performed. This search gives a lot of crystal structures that are
relevant to FPIN. Out of the relevant structures, three
most closely related crystal structures are compared with the crystal
structure of FPIN. Reference codes are NUQSAU (containing a 2-fluoro-substituted phenyl ring, a polymorphous of FPIN solved in the P212121 space group),[22]FEQWEE (containing a 3-fluoro-substituted phenyl ring),[23] and MUDGAT (containing a 4-fluoro-substituted
phenyl ring).[24]NUQSAU is
polymorphous of FPIN that has both enol and keto forms
with occupancies of 57 and 43%, respectively, whereas FPIN is different from NUQSAU as it has an enol form. No
intermolecular H-bonding is present in NUQSAU, whereas
H-bonding of type C–H···O and C–H···F
is found in the crystal packing of FPIN. As in FPIN, FEQWEE and MUDGAT also adopt
an enol tautomeric form, and the same type of intramolecular H-bonding
is found, but the crystal packing is not explored in FEQWEE and MUDGAT.
Figure 4
Packing diagram of FPIN showing
C8 chains formed by
molecules that run along the a crystallographic axis.
Only H-atoms that are involved in H-bonding are displayed.
Packing diagram of FPIN showing
C8 chains formed by
molecules that run along the a crystallographic axis.
Only H-atoms that are involved in H-bonding are displayed.
Hirshfeld Surface Analysis
As far
as the crystal packing is concerned, the various non-covalent interactions
are the main aspect to be explored because they provide us the unique
information about the arrangement of molecules throughout the crystalline
material. For the exploration of the non-covalent interactions, the
Hirshfeld surface (HS) inspection is accomplished using Crystal Explorer
(17.5).[25] The HS is popped up by a strive
to specify the space inhabited by a molecule for the sake of dividing
the density of an electron of the whole crystal into the electronic
density of molecular fragments.[26] The HS
can be made by using different features such as the shape index, dnorm (normalized distance), electrostatic potential,
and so forth. Each surface presents exceptional information regarding
the non-covalent interactions. The HS of a molecule plotted over property dnorm contains three colors, red, blue, and white.
Red and white colors on the HS indicate the inter-atomic contacts
where the distance among the atoms is less than or equal to the summation
of van der Waals radii of the involved atoms, respectively. Blue regions
on the HS show that the space among the atoms is more than the summation
of van der Waals radii of the involved atoms. We can say that red
colored, white colored, and blue colored spots on the HS indicate
strong, comparatively weak, and negligibly weak intermolecular interactions,
respectively. Around the hydroxyl group of both compounds, one of
the CH of the (trifluoromethyl)phenyl group in MFIP and
one of the CH of the fluorophenyl group in FPIN, the
HS has red spots, which indicates that these specific atoms are promising
in the H-bonding interaction. C–H···F bonding
is present in MFIP (Table ), but it involves a minor part of the disordered trifluoro
group, and we made the HS by taking mainly the disordered group portion.
Therefore, around an F-atom of the disordered group (Figure a), the HS has no red spot;
however, around an F-atom of FPIN (Figure b), the HS containing a red spot indicates
that the F-atom is engaged in an H-bonding interaction. Not only H-bonding
interactions can be visualized by plotting HS, but we can explore
a weak interaction of type π···π stacking
interaction. In order to visualize this interaction, the HS is plotted
on a shape index. A π···π stacking interaction
is indicated on the HS by the presence of consecutive triangular regions
of red and blue around the aromatic rings.[27,28] For both compounds, the consecutive triangular regions of red and
blue are present on the HS around the aromatic rings, which indicates
that the π···π stacking interaction is
present (Figure c,d).
In H-bonding interactions, hydrogen bond acceptors and donors can
be codified or separately recognized by plotting the HS over the property
named as the electrostatic potential. Blue and red spots on this HS
around the atoms specify H-bond donors and H-bond acceptors, respectively
(Figure e,f).
Figure 5
HS plotted
over a property named as dnorm for (a) MFIP in the range −0.175 to 1.341 a.u.
(b) FPIN in the range −0.047 to 1.308 a.u. HS
plotted over a property named as shape index in the range −1
to 1 a.u. for (c) MFIP and (d) FPIN. HS
plotted over the electrostatic potential for (e) MFIP in the range −0.083 to 0.052 a.u. and (f) FPIN in the range −0.069 to 0.034 a.u.
HS plotted
over a property named as dnorm for (a) MFIP in the range −0.175 to 1.341 a.u.
(b) FPIN in the range −0.047 to 1.308 a.u. HS
plotted over a property named as shape index in the range −1
to 1 a.u. for (c) MFIP and (d) FPIN. HS
plotted over the electrostatic potential for (e) MFIP in the range −0.083 to 0.052 a.u. and (f) FPIN in the range −0.069 to 0.034 a.u.We are going to express the non-covalent interactions in a quantitative
manner by finding out the role that the interatomic contacts play
in the stabilization of the crystal packing.[29] We make a comparative study of some important 2D plots of MFIP and FPIN with some nitrogen–oxygen–halogen-rich
compounds found from the literature. We choose compounds with the
CSD reference code EQIDAL (CCDC number1410273),[30]ILUHIJ (CCDC number 2018498),[31] and JIPZUG (CCDC number 1884126)[32] for the 2D plots’ comparison with MFIP and FPIN. The 2D plots provide us the endowment
of the inter-atomic contacts in percentage. The distance from the
HS to the nearest atom outside and inside the HS is denoted by de and di, respectively. Computation of each interatomic
contact includes the contribution of its reciprocal contact. Figure a,e,i,m,q shows the
2D plot for all the possible interactions in the crystal packing of MFIP, FPIN, EQIDAL, ILUHIJ, and JIPZUG, respectively. A π···π
stacking interaction in all the above-mentioned compounds is indicated
by the central region of sky blue color. For MFIP, the
interatomic contact of the greatest contributor in the crystal packing
is F···H, with a percentage contribution of 33.3% (Figure d). For FPIN, the contact of the greatest contributor is H···H
(36.1%) (Figure f).
The contributions of the H···H contact for MFIP, EQIDAL, ILUHIJ, and JIPZUG are 25.1% (Figure b), 72% (Figure j),
66.5% (Figure n),
and 33.9% (Figure r), respectively. The contribution of the C···H contact
in the crystal packing is the greatest for FPIN (35.8%, Figure g) as compared to
the contribution of the C···H contact in other compounds.
The contributions of the C···H contact for MFIP, EQIDAL, ILUHIJ, and JIPZUG are 20% (Figure c), 10.4% (Figure k), 22% (Figure o),
and 26.6% (Figure s), respectively. The contribution of the F···H contact
is the greatest for MFIP as it contains a trifluoro group,
which is absent in the other compounds. The other interatomic contacts
for MFIP and FPIN are compared in Figure S2. O···H, C···C,
O···C, and N···C contacts have contributions
of 11.1, 4.6, 1.8, and 1.5% (Figure S2a–d), respectively, for MFIP. For FPIN, O···H,
C···C, O···C, and N···C
contacts have contributions of 7.5, 3.5, 0.6, and 0.4% (Figure S2e–h), respectively. The enrichment
ratio[33] is computed for all the possible
pairs of chemical species (X, X) and (X, Y) in MFIP and FPIN in order to determine the tendency of a pair of chemical
species to form crystal packing interactions. The results are summarized
in Table S2 for MFIP and Table S3 for FPIN. The results infer
that the F···H/H···F contact has the
highest propensity to form crystal packing interactions in MFIP with an enrichment ratio of 1.67, whereas the O···H/H···O
contact has the highest propensity to form crystal packing interactions
in FPIN with an enrichment ratio of 1.45.
Figure 6
Important 2D finger print
plots of MFIP (a–d)
and FPIN (e–h) that are compared with important
2D finger print plots of some nitrogen–oxygen–halogen-rich
compounds found from the literature with CSD reference codes EQIDAL (i–l), ILUHIJ (m–p), and JIPZUG (q–t).
Important 2D finger print
plots of MFIP (a–d)
and FPIN (e–h) that are compared with important
2D finger print plots of some nitrogen–oxygen–halogen-rich
compounds found from the literature with CSD reference codes EQIDAL (i–l), ILUHIJ (m–p), and JIPZUG (q–t).As we explore the quantitative analysis of the interatomic contact,
now we are going to explore the crystal packing in a unique way by
the determination of the interaction of an atom in the HS with all
the atoms of the neighboring molecules (ALL).[34] For both compounds, the strongest interaction of that kind is H-ALL,
having a 56.1% percentage contribution for MFIP (Figure S3a) and 60.4% for FPIN (Figure S3b). The other interactions of such a
kind are C-ALL, F-ALL, O-ALL, and N-ALL for both compounds with percentage
contributions of 17.7, 17.6, 7.1, and 1.5%, respectively, for MFIP and 26.9, 6.8, 4.3, and 1.6%, respectively, for FPIN. All the atoms present inside the HS (ALL) interact with
an atom of the neighboring molecules, so we find ALL-atom interactions.
The ALL-H interaction is the strongest interaction for both compounds
with percentage contributions of 59.8% for MFIP (Figure S3c) and 67.4% for FPIN (Figure S3d). The other interactions of such a
nature for MFIP are ALL-F, ALL-C, ALL-O, and ALL-N with
percentage contributions of 16.9, 15.4, 6.5, and 1.3%, respectively.
Similarly, for FPIN, such interactions other than the
strongest contributor are ALL-C, ALL-F, ALL-O, and ALL-N, having percentage
contributions of 20.7, 6.8, 3.8, and 1.2%, respectively.By
the application of an external force to a single crystal, a
strain is produced in it. If a single crystal is not mechanically
stable, then it cannot bear the external force of significant magnitude
and it will break. In order to find out whether the single crystals
of MFIP and FPIN are mechanically stabilized
or not, we find out the voids for both compounds. The void analysis
we perform is based on an assumption, that is, all the atoms of a
molecule are spherically symmetric and then the electron density of
each atom is added up.[35] The void volumes
are 412.25 Å3 for MFIP and 79.19 Å3 for FPIN (Figure ). The percentage spaces occupied by the molecules
in the crystal packing are almost 85% for MFIP and 88%
for FPIN. This analysis shows that both compounds are
mechanically stable. Both compounds contain no large cavity in the
crystal packing and the strength of the crystal packing is almost
equal in both compounds.
Figure 7
Void analysis using an isosurface value of 0.0002
a.u. for (a) MFIP, a view along the c-axis, and for (b) FPIN, a view along the b-axis.
Void analysis using an isosurface value of 0.0002
a.u. for (a) MFIP, a view along the c-axis, and for (b) FPIN, a view along the b-axis.
Computational
Procedure
By utilizing the Gaussian 09 package program,[36] quantum chemical analyses for synthesized compounds
were
accomplished. The primary structures of FPIN and MFIP were attained by the SC-XRD. Then, a DFT[37] study was approached utilizing M06/6-311G(d,p) as the level
of theory for optimizing geometries.[38] The
absence of negative frequencies represented optimization at true minima.
Additionally, the natural bond orbital (NBO), the Frontier molecular
orbital (FMO), and the nonlinear optical (NLO) investigations were
also performed by utilizing optimized structures of the title compounds
at the aforesaid functional. All results were interpreted by utilizing
GaussSum,[39] ChemCraft,[40] Avogadro,[41] and GaussView 5.0[42] computational programs.
NBO Analysis
The NBO approach is
an outstanding method that shows useful aspects for understanding
interactions between atoms and provides a suitable foundation for
representing charge transfer between vacant and filled atomic orbitals.[43] Further, NBO analysis is also beneficial to
explain the proper and valid picture of the charge densities and intramolecular
delocalization from the donor to acceptor moiety. In NBO analysis,
second-order perturbation-based stabilization energy of compound structures
can be computed by using eq .In the
above equation, the donor is
signified as (i), the acceptor is signified as (j), the stabilization energy is represented by E(2), and the diagonal, off-diagonal, orbital occupancy,
and NBO Fock matrix elements are represented by ε, ε, q, and F , respectively. NBO analysis
of the title compounds has been performed and their characteristic
interactions are tabulated in Table , while the remaining data are collected in Tables S4 and S5.
Table 3
NBO Analysis
of the Studied Compounds
comp
donor (i)
type
acceptor (j)
type
E(2)a[kcal/mol]
E(J)E(i)b(a.u)
F(I,j)c(a.u
MFIP
C26–C28
π
C30–C31
π*
23.1
0.30
0.074
C8–C9
π
C8–C9
π*
1.82
0.29
0.021
C30–C31
σ
C28–C30
σ*
5.96
1.30
0.079
F2–C33
σ
F3–C33
σ*
0.68
1.33
0.027
O4
LP(2)
C8–C9
π*
39.52
0.36
0.113
F1
LP(1)
C30–C33
σ*
0.52
1.49
0.025
FPIN
C5–C20
π
N4–C21
π*
26.35
0.29
0.08
C5–C20
π
C5–C20
π*
3.48
0.29
0.029
C11–H12
σ
C10–C19
σ*
5.20
1.08
0.067
C15–H16
σ
C13–C15
σ*
0.52
1.09
0.021
O2
LP(2)
C5–C20
π*
44.37
0.36
0.118
O2
LP(1)
C5–C6
σ*
0.73
1.14
0.026
Some dominant π → π*
transitions are examined
such as π(C26–C28) → π*(C30–C31)
and π(C5–C20) → π*(N4–C21) having
greater stabilization energies: 23.1 and 26.35 kcal/mol in MFIP and FPIN, respectively (Table ). Furthermore, some other significant π
→ π* electronic transitions of the title compounds are
presented in Tables S4 and S5. Nevertheless,
π(C8–C9) → π*(C8–C9) and π(C5–C20)
→ π*(C5–C20) transitions are noted with the least
values of stabilization energy of 1.82 and 3.48 kcal/mol in MFIP and FPIN, respectively.Due to the
resonance process, the massive stabilization energy
values: 39.52 and 44.37 kcal/mol, respectively, are found for the
transition LP2(O4) → π*(C8–C9) in MFIP and LP2(O2) → π*(C5–C20)) in FPIN. Similarly, LP1(F1) → σ*(C30–C33) and LP1(O2)
→ σ*(C5–C6) transitions are examined with least
values (0.52 and 0.73 kcal/mol) of stabilization energy in MFIP and FPIN, respectively. The electronic transitions
associated with σ → σ* are known to be weak transitions
aroused as a result of a weak interaction between donor and acceptor
moieties. Among all σ → σ* transitions in both MFIP and FPIN, σ(C30–C31) →
σ*(C28–C30) and σ(C11–H12) → σ*(C10–C19)
are found having the highest stabilization energies of 5.96 and 5.20
kcal/mol, respectively. However, σ(F2–C33) → σ*(F3–C33)
and σ(C15–H16) → σ*(C13–C15) transitions
exhibiting the lowest energy values as 0.68 and 0.52 kcal/mol are
observed in MFIP and FPIN, respectively.
The above discussion revealed that hyper-conjugative interactions
and extended conjugation are responsible for the stability of the
title compounds.
FMO Analysis
An
FMO investigation
is considered to be a very effective parameter to elaborate the charge
transfer and chemical stability of compounds.[44,45] As a consequence of having an electron-rich nature, the electron-donating
ability is found good in higher occupied molecular orbitals (HOMOs),
while the electron-accepting capability is observed in lower unoccupied
molecular orbitals (LUMOs).[46] Moreover,
the band gap significantly demonstrates the NLO properties of the
studied compounds, and the energy difference between the HOMOs and
LUMOs is known by the formula Egap = ELUMO – EHOMO. It is conjectured that the chromophores with a smaller band gap
are more polarized and can be considered as good NLO materials.[47]The energies for HOMO are noted to be
−6.32 and −6.24 eV while those for LUMO are found to
be −1.93 and −2.07 eV for MFIP and FPIN, respectively. Further, Table shows that the HOMO/LUMO band gap calculated
for MFIP is found higher (4.39 eV) than for FPIN (4.17 eV).
Table 4
Computed Orbital Energies and Their
Band Gapsa
MOs
MFIP
ΔE
FPINΔE
LUMO
–1.93
4.39
–2.07
4.17
HOMO
–6.32
–6.24
LUMO + 1
–0.86
6.02
–0.89
6.12
HOMO – 1
–6.87
–7.01
LUMO + 2
–0.27
7.36
–0.39
6.77
HOMO – 2
–7.64
–7.16
MO = molecular
orbital, ΔE = EL – EH, units in eV.
MO = molecular
orbital, ΔE = EL – EH, units in eV.However, in UV–vis spectra
(Figures S4 and S5), the maximum wavelength (λmax)
for MFIP is found to be 312 nm at a maximum oscillator
strength (0.572) with MO contributions: H-1 → L (88%), H-4
→ L (3%), and H-2 → L (7%), smaller than λmax = 371 nm of FPIN at a maximum oscillator strength
(0.578) with MO contributions: H → L (98%) (Tables S5 and S6). This might be due to the extended conjugation
owing to the presence of the benzene ring in FPIN, which
stabilized the molecule by lowering its Eg.[48] Accompanied with the energies, the
charge transfer between the molecules can also be explained by FMOs.[49] Therefore, we calculated the intramolecular
charge transfer (ICT) between the orbitals and their pictographs,
which are displayed in Figures and S6. In MFIP,
for HOMO, the electronic cloud is concentrated over the methoxy group
and benzene ring, while the LUMO is located over the entire crystals
except for the trifluoromethyl group. In FPIN, the charge
density regarding HOMO/LUMO is intensely located all over the molecule,
as shown in Figure .
Figure 8
HOMOs and LUMOs of the studied compounds.
HOMOs and LUMOs of the studied compounds.
Global Reactivity Parameters
The
HOMO/LUMO band gap (ΔE) is a crucial factor
to elaborate the global reactivity parameters (GRPs) such as chemical
hardness (η), chemical softness (σ), global electrophilicity
(ω), electronegativity (X), ionization energy
(IP), and electron affinity (EA) of the compounds.[50] With the help of these parameters, the kinetic stability
and reactivity of compounds can be explained. The ionization potential
of MFIP and FPIN can be calculated to express
their electron-donating and -accepting ability, which is the amount
of energy required to pull out an electron from HOMO. The ionization
potential is found significant to measure the amount of energy needed
to pull an electron out from HOMO, which is endowed to be useful to
manifest their capability to donate and accept electrons. Being a
significant chemical property, electronegativity can determine the
capability of compounds to gain electrons coming toward them. The
stability of compounds can be analyzed by the chemical hardness (η)
and chemical potential (μ). These parameters can be calculated
using the following equations for the title compounds, and the results
are listed in Table
Table 5
Global Reactivity
Descriptors of the
Entitled Compoundsa
comp
I
EA
X
η
ω
σ
μ
MFIP
6.319
1.932
4.125
2.193
3.879
0.227
–4.125
FPIN
6.237
2.069
4.153
2.084
4.138
0.239
–4.153
Units are
in eV.
Units are
in eV.From Table , it
is found that a higher value of ionization energy is found for MFIP (6.319 eV) than for FPIN (6.237 eV). Interestingly,
a greater value of the electron affinity (EA = 2.069 eV) is found
in FPIN with a larger electronegativity (X=4.153 eV) than in MFIP (EA = 1.932 eV and X = 4.125 eV). However, both parameters are comparable in MFIP and FPIN, which indicated their greater ability to
attract the electron toward themselves due to the fluoro groups. The
energy gap and hardness of a compound are directly proportional to
each other. For this, the compound having a more dominant band gap
is observed to be harder, less reactive, more kinetically stable,
and more resistant against the change in electronic configuration.
Contrarily, the compounds with a smaller energy band gap are considered
to be soft and having a lower kinetic stability and more chemical
reactivity.[51] Considering the above-mentioned
information, MFIP has a higher value of global hardness
(η = 2.193 eV) with a small value of softness (σ = 0.227
eV) than that of FPIN (η = 2.084 eV and σ
= 0.239 eV). The aforesaid facts revealed that FPIN is
somehow less stable and a more reactive specie than MFIP. This is may be due to the presence of more resonance effect due
to the presence of two benzene rings in the donor unit of FPIN, which also reduces the energy band gap of the orbitals.
The synthesis of two halo-functionalized
crystalline organic compounds
(MFIP and FPIN), SC-XRD, the HS, and DFT
studies have been reported. SC-XRD infers that intramolecular H-bonding
of type O–H···N stabilizes the molecular configuration
of both compounds to form a pseudo-six-membered ring. Weak H-bonding
and off-set π···π stacking interaction
stabilize the crystal packing of both compounds. The non-covalent
interactions are explored for both compounds by HS analysis, and 2D
fingerprint plots of both compounds are compared with some nitrogen–oxygen–halogen-rich
compounds found from the literature. The comparative study of DFT
and SC-XRD findings showed a good agreement for geometrical parameters.
Additionally, the NBO investigation uncovered the hyper-conjugative
interactions in both compounds. The energies of the HOMO/LUMO for MFIP and FPIN are found to be −6.32/–1.93
with a band gap of 4.39 eV and −6.24/–2.07 eV with a
band gap of 4.17 eV, respectively. The values of hardness for MFIP and FPIN (η = 2.193 eV and 2.084 eV)
were reported larger than their values of global softness (σ
= 0.239 eV and 277 eV). Consequently, the GRP disclosed that both MFIP and FPIN have a greater stability as suggested
by SC-XRD and NBO investigations, and both compounds unveiled noteworthy
NLO responses.
Experimental Section
Synthesis and Crystallization
The
imine/Schiff base compounds MFIP and FPIN were synthesized by the condensation reaction of 3-(trifluoromethyl)
aniline and 2-hydroxy-3-methoxybenzaldehyde in the case of MFIP and 2-hydroxy-1-naphthaldehyde and 2-fluoroaniline in the case of FPIN.
Synthesis of MFIP(55,56)
In a 50 mL round bottom flask, 2-hydroxy-3-methoxybenzaldehyde
(1 mmol, 1 equiv) was dissolved in 30 mL of dry ethanol and then 3-(trifluoromethyl)
aniline (1.2 mmol, 1.2 equiv) was added. The stirring reaction mixture
was refluxed for 3 h. After completion (indicated by TLC), the mixture
was allowed to cool at room temperature and transferred to a 50 mL
beaker. The beaker was covered by an aluminum foil leaving small holes
at the surface and left overnight to get pure crystals of the final
product that were analyzed by XRD analysis.
Synthesis
of FPIN
The compound FPIN was also
synthesized by employing
the above same procedure except for using 2-hydroxy-1-naphthaldehyde
and 2-fluoroaniline as aldehyde and aniline components, respectively. Scheme .
Scheme 1
Synthetic Scheme
of Crystalline Imines (Schiff Bases) MFIP and FPIN
Materials
and Methods
The fluoro-functionalized
imines were prepared using the substituted benzaldehyde and substituted
anilines of highest purity. Simple distillation was employed for solvent
purification. The pre-coated silica gel aluminum sheet (Merck company)
was used for thin-layer chromatography to check the reaction progress.
The Bruker Kappa Apex-II diffractometer characterized by Mo Kα
radiation was used for X-ray data collection. X-ray data collection
was performed by using software Apex-II,[57] whereas a software named SAINT was used for the purpose of integration
of data.[58] A software called SHEXS-97 was
used[59] for the structure solution of the
raw data, whereas SHEXL 2018/3[60] was employed
for data refinement. Anisotropic displacement parameters were allotted
to all atoms other than H atoms, whereas H-atoms were located in ideal
sites and were refined as riding atoms with relative isotropic displacement
parameters. For graphical illustration of SC-XRD results, PLATON,[61] Mercury 4.0,[62] and
ORTEP-3[63] were employed.
Authors: Aamer Saeed; Saba Ashraf; Jonathan M White; Delia B Soria; Carlos A Franca; Mauricio F Erben Journal: Spectrochim Acta A Mol Biomol Spectrosc Date: 2015-06-01 Impact factor: 4.098
Authors: Akbar Ali; Muhammad Khalid; Muhammad Nawaz Tahir; Muhammad Imran; Muhammad Ashfaq; Riaz Hussain; Mohammed A Assiri; Imran Khan Journal: ACS Omega Date: 2021-03-03