Literature DB >> 33742389

Solution NMR backbone assignments of the N-terminal Zα-linker-Zβ segment from Homo sapiens ADAR1p150.

Parker J Nichols1, Morkos A Henen1,2, Quentin Vicens3, Beat Vögeli4.   

Abstract

Adenosine-to-inosine (A-to-I) editing of a subset of RNAs in a eukaryotic cell is required in order to avoid triggering the innate immune system. Editing is carried out by ADAR1, which exists as short (p110) and long (p150) isoforms. ADAR1p150 is mostly cytoplasmic, possesses a Z-RNA binding domain (Zα), and is only expressed during the innate immune response. A structurally homologous domain to Zα, the Zβ domain, is separated by a long linker from Zα on the N-terminus of ADAR1 but its function remains unknown. Zβ does not bind to RNA in isolation, yet the binding kinetics of the segment encompassing Zα, Zβ and the 95-residue linker between the two domains (Zα-Zβ) are markedly different compared to Zα alone. Here we present the solution NMR backbone assignment of Zα-Zβ from H. Sapiens ADAR1. The predicted secondary structure of Zα-Zβ based on chemical shifts is in agreement with previously determined structures of Zα and Zβ in isolation, and indicates that the linker is intrinsically disordered. Comparison of the chemical shifts between the individual Zα and Zβ domains to the full Zα-Zβ construct suggests that Zβ may interact with the linker, the function of which is currently unknown.
© 2021. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  ADAR1; Backbone chemical shift assignment; Editing; Protein domains; Protein structure and dynamics; Z-RNA

Mesh:

Year:  2021        PMID: 33742389      PMCID: PMC9199369          DOI: 10.1007/s12104-021-10017-8

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.731


  26 in total

1.  The zalpha domain of the editing enzyme dsRNA adenosine deaminase binds left-handed Z-RNA as well as Z-DNA.

Authors:  B A Brown; K Lowenhaupt; C M Wilbert; E B Hanlon; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

Review 2.  Using chemical shift perturbation to characterise ligand binding.

Authors:  Mike P Williamson
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-03-21       Impact factor: 9.795

3.  A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs.

Authors:  R W Wagner; J E Smith; B S Cooperman; K Nishikura
Journal:  Proc Natl Acad Sci U S A       Date:  1989-04       Impact factor: 11.205

4.  Short but Weak: The Z-DNA Lone-Pair⋅⋅⋅π Conundrum Challenges Standard Carbon Van der Waals Radii.

Authors:  Holger Kruse; Klaudia Mrazikova; Luigi D'Ascenzo; Jiri Sponer; Pascal Auffinger
Journal:  Angew Chem Int Ed Engl       Date:  2020-07-15       Impact factor: 15.336

5.  Application of iterative soft thresholding for fast reconstruction of NMR data non-uniformly sampled with multidimensional Poisson Gap scheduling.

Authors:  Sven G Hyberts; Alexander G Milbradt; Andreas B Wagner; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2012-02-14       Impact factor: 2.835

6.  Structure-function analysis of the Z-DNA-binding domain Zalpha of dsRNA adenosine deaminase type I reveals similarity to the (alpha + beta) family of helix-turn-helix proteins.

Authors:  M Schade; C J Turner; K Lowenhaupt; A Rich; A Herbert
Journal:  EMBO J       Date:  1999-01-15       Impact factor: 11.598

7.  The PIP2 binding mode of the C2 domains of rabphilin-3A.

Authors:  Pierre Montaville; Nicolas Coudevylle; Anand Radhakrishnan; Andrei Leonov; Markus Zweckstetter; Stefan Becker
Journal:  Protein Sci       Date:  2008-04-23       Impact factor: 6.725

8.  Proteolytic dissection of Zab, the Z-DNA-binding domain of human ADAR1.

Authors:  T Schwartz; K Lowenhaupt; Y G Kim; L Li; B A Brown; A Herbert; A Rich
Journal:  J Biol Chem       Date:  1999-01-29       Impact factor: 5.157

9.  The CCPN data model for NMR spectroscopy: development of a software pipeline.

Authors:  Wim F Vranken; Wayne Boucher; Tim J Stevens; Rasmus H Fogh; Anne Pajon; Miguel Llinas; Eldon L Ulrich; John L Markley; John Ionides; Ernest D Laue
Journal:  Proteins       Date:  2005-06-01

10.  NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.

Authors:  Woonghee Lee; Marco Tonelli; John L Markley
Journal:  Bioinformatics       Date:  2014-12-12       Impact factor: 6.937

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.