Literature DB >> 11087828

The zalpha domain of the editing enzyme dsRNA adenosine deaminase binds left-handed Z-RNA as well as Z-DNA.

B A Brown1, K Lowenhaupt, C M Wilbert, E B Hanlon, A Rich.   

Abstract

The Zalpha domain of human double-stranded RNA adenosine deaminase 1 binds specifically to left-handed Z-DNA and stabilizes the Z-conformation. Here we report spectroscopic and analytical results that demonstrate that Zalpha can also stabilize the left-handed Z-conformation in double-stranded RNA. Zalpha induces a slow transition from the right-handed A-conformation to the Z-form in duplex r(CG)(6), with an activation energy of 38 kcal mol(-1). We conclude that Z-RNA as well as Z-DNA can be accommodated in the tailored binding site of Zalpha. The specific binding of Z-RNA by Zalpha may be involved in targeting double-stranded RNA adenosine deaminase 1 for a role in hypermutation of RNA viruses.

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Keywords:  Non-programmatic

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Year:  2000        PMID: 11087828      PMCID: PMC17610          DOI: 10.1073/pnas.240464097

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA.

Authors:  T Schwartz; M A Rould; K Lowenhaupt; A Herbert; A Rich
Journal:  Science       Date:  1999-06-11       Impact factor: 47.728

2.  A 6 bp Z-DNA hairpin binds two Z alpha domains from the human RNA editing enzyme ADAR1.

Authors:  M Schade; J Behlke; K Lowenhaupt; A Herbert; A Rich; H Oschkinat
Journal:  FEBS Lett       Date:  1999-09-10       Impact factor: 4.124

Review 3.  When two strands are better than one: the mediators and modulators of the cellular responses to double-stranded RNA.

Authors:  B L Jacobs; J O Langland
Journal:  Virology       Date:  1996-05-15       Impact factor: 3.616

4.  The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences.

Authors:  A Herbert; M Schade; K Lowenhaupt; J Alfken; T Schwartz; L S Shlyakhtenko; Y L Lyubchenko; A Rich
Journal:  Nucleic Acids Res       Date:  1998-08-01       Impact factor: 16.971

Review 5.  RNA editing and hypermutation by adenosine deamination.

Authors:  B L Bass
Journal:  Trends Biochem Sci       Date:  1997-05       Impact factor: 13.807

6.  Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly (dG-dC).

Authors:  F M Pohl; T M Jovin
Journal:  J Mol Biol       Date:  1972-06-28       Impact factor: 5.469

7.  A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase.

Authors:  A Herbert; J Alfken; Y G Kim; I S Mian; K Nishikura; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-05       Impact factor: 11.205

8.  Spectroscopic characterization of a DNA-binding domain, Z alpha, from the editing enzyme, dsRNA adenosine deaminase: evidence for left-handed Z-DNA in the Z alpha-DNA complex.

Authors:  I Berger; W Winston; R Manoharan; T Schwartz; J Alfken; Y G Kim; K Lowenhaupt; A Herbert; A Rich
Journal:  Biochemistry       Date:  1998-09-22       Impact factor: 3.162

9.  Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: evidence for two forms of the deaminase.

Authors:  J B Patterson; C E Samuel
Journal:  Mol Cell Biol       Date:  1995-10       Impact factor: 4.272

10.  Proteolytic dissection of Zab, the Z-DNA-binding domain of human ADAR1.

Authors:  T Schwartz; K Lowenhaupt; Y G Kim; L Li; B A Brown; A Herbert; A Rich
Journal:  J Biol Chem       Date:  1999-01-29       Impact factor: 5.157

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  47 in total

1.  Complex regulation of the human gene for the Z-DNA binding protein DLM-1.

Authors:  Stefan Rothenburg; Thomas Schwartz; Friedrich Koch-Nolte; Friedrich Haag
Journal:  Nucleic Acids Res       Date:  2002-02-15       Impact factor: 16.971

Review 2.  Unusual DNA duplex and hairpin motifs.

Authors:  Shan-Ho Chou; Ko-Hsin Chin; Andrew H-J Wang
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

3.  A role for Z-DNA binding in vaccinia virus pathogenesis.

Authors:  Yang-Gyun Kim; Maneesha Muralinath; Teresa Brandt; Matthew Pearcy; Kevin Hauns; Ky Lowenhaupt; Bertram L Jacobs; Alexander Rich
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-30       Impact factor: 11.205

Review 4.  Activity regulation of adenosine deaminases acting on RNA (ADARs).

Authors:  Cesare Orlandi; Alessandro Barbon; Sergio Barlati
Journal:  Mol Neurobiol       Date:  2011-11-20       Impact factor: 5.590

Review 5.  Substitutional A-to-I RNA editing.

Authors:  Bjorn-Erik Wulff; Kazuko Nishikura
Journal:  Wiley Interdiscip Rev RNA       Date:  2010 Jul-Aug       Impact factor: 9.957

6.  A PKR-like eukaryotic initiation factor 2alpha kinase from zebrafish contains Z-DNA binding domains instead of dsRNA binding domains.

Authors:  Stefan Rothenburg; Nikolaus Deigendesch; Katharina Dittmar; Friedrich Koch-Nolte; Friedrich Haag; Ky Lowenhaupt; Alexander Rich
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-19       Impact factor: 11.205

7.  Single-molecule measurements of the persistence length of double-stranded RNA.

Authors:  J A Abels; F Moreno-Herrero; T van der Heijden; C Dekker; N H Dekker
Journal:  Biophys J       Date:  2005-01-14       Impact factor: 4.033

8.  The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation.

Authors:  Mika A Kastenholz; Thomas U Schwartz; Philippe H Hünenberger
Journal:  Biophys J       Date:  2006-10-15       Impact factor: 4.033

9.  CRM1 mediates the export of ADAR1 through a nuclear export signal within the Z-DNA binding domain.

Authors:  H Poulsen; J Nilsson; C K Damgaard; J Egebjerg; J Kjems
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

10.  The 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove.

Authors:  D A Adamiak; W R Rypniewski; J Milecki; R W Adamiak
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

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