Literature DB >> 33741410

Unstructural Biology of TRP Ion Channels: The Role of Intrinsically Disordered Regions in Channel Function and Regulation.

Benedikt Goretzki1, Charlotte Guhl2, Frederike Tebbe1, Jean-Martin Harder3, Ute A Hellmich4.   

Abstract

The first genuine high-resolution single particle cryo-electron microscopy structure of a membrane protein determined was a transient receptor potential (TRP) ion channel, TRPV1, in 2013. This methodical breakthrough opened up a whole new world for structural biology and ion channel aficionados alike. TRP channels capture the imagination due to the sheer endless number of tasks they carry out in all aspects of animal physiology. To date, structures of at least one representative member of each of the six mammalian TRP channel subfamilies as well as of a few non-mammalian families have been determined. These structures were instrumental for a better understanding of TRP channel function and regulation. However, all of the TRP channel structures solved so far are incomplete since they miss important information about highly flexible regions found mostly in the channel N- and C-termini. These intrinsically disordered regions (IDRs) can represent between a quarter to almost half of the entire protein sequence and act as important recruitment hubs for lipids and regulatory proteins. Here, we analyze the currently available TRP channel structures with regard to the extent of these "missing" regions and compare these findings to disorder predictions. We discuss select examples of intra- and intermolecular crosstalk of TRP channel IDRs with proteins and lipids as well as the effect of splicing and post-translational modifications, to illuminate their importance for channel function and to complement the prevalently discussed structural biology of these versatile and fascinating proteins with their equally relevant 'unstructural' biology.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  TRP channel sensitization and inhibition; alternative splicing; disorder predictions; post-translational modification; protein and lipid interactions

Year:  2021        PMID: 33741410     DOI: 10.1016/j.jmb.2021.166931

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  8 in total

Review 1.  Membranes under the Magnetic Lens: A Dive into the Diverse World of Membrane Protein Structures Using Cryo-EM.

Authors:  Sarah J Piper; Rachel M Johnson; Denise Wootten; Patrick M Sexton
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

Review 2.  Lighting up Nobel Prize-winning studies with protein intrinsic disorder.

Authors:  Lolita Piersimoni; Marina Abd El Malek; Twinkle Bhatia; Julian Bender; Christin Brankatschk; Jaime Calvo Sánchez; Guy W Dayhoff; Alessio Di Ianni; Jhonny Oscar Figueroa Parra; Dailen Garcia-Martinez; Julia Hesselbarth; Janett Köppen; Luca M Lauth; Laurin Lippik; Lisa Machner; Shubhra Sachan; Lisa Schmidt; Robin Selle; Ioannis Skalidis; Oleksandr Sorokin; Daniele Ubbiali; Bruno Voigt; Alice Wedler; Alan An Jung Wei; Peter Zorn; Alan Keith Dunker; Marcel Köhn; Andrea Sinz; Vladimir N Uversky
Journal:  Cell Mol Life Sci       Date:  2022-07-26       Impact factor: 9.207

3.  Analysis of hyperforin (St. John's wort) action at TRPC6 channel leads to the development of a new class of antidepressant drugs.

Authors:  Yamina El Hamdaoui; Fang Zheng; Nikolas Fritz; Lian Ye; Mai Anh Tran; Kevin Schwickert; Tanja Schirmeister; Albert Braeuning; Dajana Lichtenstein; Ute A Hellmich; Dorothee Weikert; Markus Heinrich; Giulia Treccani; Michael K E Schäfer; Gabriel Nowak; Bernd Nürnberg; Christian Alzheimer; Christian P Müller; Kristina Friedland
Journal:  Mol Psychiatry       Date:  2022-10-12       Impact factor: 13.437

4.  Backbone and nearly complete side-chain chemical shift assignments reveal the human uncharacterized protein CXorf51A as intrinsically disordered.

Authors:  Christoph Wiedemann; Kingsley Benjamin Obika; Sandra Liebscher; Jan Jirschitzka; Oliver Ohlenschlãger; Frank Bordusa
Journal:  Biomol NMR Assign       Date:  2021-08-20       Impact factor: 0.746

5.  Multiubiquitination of TRPV4 reduces channel activity independent of surface localization.

Authors:  William H Aisenberg; Brett A McCray; Jeremy M Sullivan; Erika Diehl; Lauren R DeVine; Jonathan Alevy; Anna M Bagnell; Patrice Carr; Jack K Donohue; Benedikt Goretzki; Robert N Cole; Ute A Hellmich; Charlotte J Sumner
Journal:  J Biol Chem       Date:  2022-03-14       Impact factor: 5.486

6.  Extent of intrinsic disorder and NMR chemical shift assignments of the distal N-termini from human TRPV1, TRPV2 and TRPV3 ion channels.

Authors:  Christoph Wiedemann; Benedikt Goretzki; Zoe N Merz; Frederike Tebbe; Pauline Schmitt; Ute A Hellmich
Journal:  Biomol NMR Assign       Date:  2022-06-06       Impact factor: 0.731

7.  Evolution of Transient Receptor Potential (TRP) Ion Channels in Antarctic Fishes (Cryonotothenioidea) and Identification of Putative Thermosensors.

Authors:  Julia M York; Harold H Zakon
Journal:  Genome Biol Evol       Date:  2022-02-04       Impact factor: 3.416

8.  Sensory neuron transcriptomes reveal complex neuron-specific function and regulation of mec-2/Stomatin splicing.

Authors:  Xiaoyu Liang; Canyon Calovich-Benne; Adam Norris
Journal:  Nucleic Acids Res       Date:  2022-03-21       Impact factor: 16.971

  8 in total

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