Literature DB >> 33733504

Protein yoga: Conformational versatility of the Hemolysin II C-terminal domain detailed by NMR structures for multiple states.

Anne R Kaplan1, Rich Olson2, Andrei T Alexandrescu1.   

Abstract

The C-terminal domain of Bacillus cereus hemolysin II (HlyIIC), stabilizes the trans-membrane-pore formed by the HlyII toxin and may aid in target cell recognition. Initial efforts to determine the NMR structure of HlyIIC were hampered by cis/trans isomerization about the single proline at position 405 that leads to doubling of NMR resonances. We used the mutant P405M-HlyIIC that eliminates the cis proline to determine the NMR structure of the domain, which revealed a novel fold. Here, we extend earlier studies to the NMR structure determination of the cis and trans states of WT-HlyIIC that exist simultaneously in solution. The primary structural differences between the cis and trans states are in the loop that contains P405, and structurally adjacent loops. Thermodynamic linkage analysis shows that at 25 C the cis proline, which already has a large fraction of 20% in the unfolded protein, increases to 50% in the folded state due to coupling with the global stability of the domain. The P405M or P405A substitutions eliminate heterogeneity due to proline isomerization but lead to the formation of a new dimeric species. The NMR structure of the dimer shows that it is formed through domain-swapping of strand β5, the last segment of secondary structure following P405. The presence of P405 in WT-HlyIIC strongly disfavors the dimer compared to the P405M-HlyIIC or P405A-HlyIIC mutants. The WT proline may thus act as a "gatekeeper," warding off aggregative misfolding.
© 2021 The Protein Society.

Entities:  

Keywords:  conformational transitions; protein aggregation; protein dynamics; protein evolution; protein substates; structure plasticity; β-pore-forming toxin

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Year:  2021        PMID: 33733504      PMCID: PMC8040871          DOI: 10.1002/pro.4066

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  51 in total

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4.  Purification and cytotoxic properties of Bacillus cereus hemolysin II.

Authors:  Zhanna I Andreeva; Vladimir F Nesterenko; Igor S Yurkov; Zhanna I Budarina; Elena V Sineva; Alexander S Solonin
Journal:  Protein Expr Purif       Date:  2005-12-09       Impact factor: 1.650

5.  DANGLE: A Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure.

Authors:  Ming-Sin Cheung; Mahon L Maguire; Tim J Stevens; R William Broadhurst
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6.  Protein structural information derived from NMR chemical shift with the neural network program TALOS-N.

Authors:  Yang Shen; Ad Bax
Journal:  Methods Mol Biol       Date:  2015

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Journal:  Protein Sci       Date:  1995-12       Impact factor: 6.725

8.  Backbone dynamics of a highly disordered 131 residue fragment of staphylococcal nuclease.

Authors:  A T Alexandrescu; D Shortle
Journal:  J Mol Biol       Date:  1994-09-30       Impact factor: 5.469

Review 9.  From soil to gut: Bacillus cereus and its food poisoning toxins.

Authors:  Lotte P Stenfors Arnesen; Annette Fagerlund; Per Einar Granum
Journal:  FEMS Microbiol Rev       Date:  2008-04-15       Impact factor: 16.408

10.  Backbone 1H and 15N resonance assignments of the N-terminal SH3 domain of drk in folded and unfolded states using enhanced-sensitivity pulsed field gradient NMR techniques.

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  2 in total

1.  Pulse-field gradient nuclear magnetic resonance of protein translational diffusion from native to non-native states.

Authors:  Richard D Whitehead; Carolyn M Teschke; Andrei T Alexandrescu
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.993

2.  Protein yoga: Conformational versatility of the Hemolysin II C-terminal domain detailed by NMR structures for multiple states.

Authors:  Anne R Kaplan; Rich Olson; Andrei T Alexandrescu
Journal:  Protein Sci       Date:  2021-03-30       Impact factor: 6.725

  2 in total

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