Literature DB >> 33718773

Uninterruptible Power Supply Improves Precision and External Validity of Telomere Length Measurement via qPCR.

Waylon J Hastings1, Dan T A Eisenberg2, Idan Shalev1.   

Abstract

Technical challenges associated with telomere length (TL) measurements have prompted concerns regarding their utility as a biomarker of aging. Several factors influence TL assessment via qPCR, the most common measurement method in epidemiological studies, including storage conditions and DNA extraction method. Here, we tested the impact of power supply during the qPCR assay. Momentary fluctuations in power can affect the functioning of high-performance electronics, including real-time thermocyclers. We investigated if mitigating these fluctuations by using an uninterruptible power supply (UPS) influenced TL assessment via qPCR. Samples run with a UPS had significantly lower standard deviation (p < 0.001) and coefficient of variation (p < 0.001) across technical replicates than those run without a UPS. UPS usage also improved exponential amplification efficiency at the replicate, sample, and plate levels. Together these improvements translated to increased performance across metrics of external validity including correlation with age, within-person correlation across tissues, and correlation between parents and offspring.

Entities:  

Keywords:  assay precision; power supply; qPCR; telomere length

Year:  2020        PMID: 33718773      PMCID: PMC7954403          DOI: 10.1017/exp.2020.58

Source DB:  PubMed          Journal:  Exp Results        ISSN: 2516-712X


  17 in total

1.  Telomere measurement by quantitative PCR.

Authors:  Richard M Cawthon
Journal:  Nucleic Acids Res       Date:  2002-05-15       Impact factor: 16.971

2.  Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data.

Authors:  Christian Ramakers; Jan M Ruijter; Ronald H Lekanne Deprez; Antoon F M Moorman
Journal:  Neurosci Lett       Date:  2003-03-13       Impact factor: 3.046

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Authors:  B L WELCH
Journal:  Biometrika       Date:  1947       Impact factor: 2.445

4.  Telomere length varies by DNA extraction method: implications for epidemiologic research.

Authors:  Julie M Cunningham; Ruth A Johnson; Kristin Litzelman; Halcyon G Skinner; Songwon Seo; Corinne D Engelman; Russell J Vanderboom; Grace W Kimmel; Ronald E Gangnon; Douglas L Riegert-Johnson; John A Baron; John D Potter; Robert Haile; Daniel D Buchanan; Mark A Jenkins; David N Rider; Stephen N Thibodeau; Gloria M Petersen; Lisa A Boardman
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2013-09-09       Impact factor: 4.254

5.  Telomere length behaves as biomarker of somatic redundancy rather than biological age.

Authors:  Jelle J Boonekamp; Mirre J P Simons; Lia Hemerik; Simon Verhulst
Journal:  Aging Cell       Date:  2013-02-22       Impact factor: 9.304

6.  Improving qPCR telomere length assays: Controlling for well position effects increases statistical power.

Authors:  Dan T A Eisenberg; Christopher W Kuzawa; M Geoffrey Hayes
Journal:  Am J Hum Biol       Date:  2015-03-10       Impact factor: 1.937

7.  Effect of master mixes on the measurement of telomere length by qPCR.

Authors:  Karen M Jiménez; Diego A Forero
Journal:  Mol Biol Rep       Date:  2018-04-05       Impact factor: 2.316

Review 8.  Telomere length measurement by qPCR - Summary of critical factors and recommendations for assay design.

Authors:  Jue Lin; Dana L Smith; Kyle Esteves; Stacy Drury
Journal:  Psychoneuroendocrinology       Date:  2018-10-10       Impact factor: 4.905

Review 9.  The hallmarks of aging.

Authors:  Carlos López-Otín; Maria A Blasco; Linda Partridge; Manuel Serrano; Guido Kroemer
Journal:  Cell       Date:  2013-06-06       Impact factor: 41.582

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Authors:  Mirjam J Knol; Wiebe R Pestman; Diederick E Grobbee
Journal:  Eur J Epidemiol       Date:  2011-03-19       Impact factor: 8.082

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  2 in total

1.  Impact of Amplification Efficiency Approaches on Telomere Length Measurement via Quantitative-Polymerase Chain Reaction.

Authors:  Waylon J Hastings; Dan T A Eisenberg; Idan Shalev
Journal:  Front Genet       Date:  2021-09-17       Impact factor: 4.599

2.  Comparing qPCR and DNA methylation-based measurements of telomere length in a high-risk pediatric cohort.

Authors:  Waylon J Hastings; Laura Etzel; Christine M Heim; Jennie G Noll; Emma J Rose; Hannah M C Schreier; Chad E Shenk; Xin Tang; Idan Shalev
Journal:  Aging (Albany NY)       Date:  2022-01-24       Impact factor: 5.682

  2 in total

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