Literature DB >> 29623565

Effect of master mixes on the measurement of telomere length by qPCR.

Karen M Jiménez1, Diego A Forero2.   

Abstract

Alterations in telomere length (TL) have been associated with several diseases and a method based on qPCR, the Monochrome Multiplex Real-Time Quantitative PCR (MMQPCR) technique, has been used extensively for the analysis of TL. Some previous studies have been found that certain methodological conditions can affect the measurement of TL. The aim of the study was to evaluate the performance of eight different commercially available SYBR Green and High-Resolution Melting (HRM) mixes on the measurement of TL by the MMQPCR method. Four SYBR Green and four HRM mixes were tested and the measurement of TL was expressed by the T/S ratio. It was found that the type of master mix used in MMQPCR influences the measurement of TL, affecting aspects such as the specificity and consistency of the results. Our results are the first description of the effects of different master mixes on TL analysis by MMQPCR and highlight the importance of the future methodological improvement of this broadly used technique.

Entities:  

Keywords:  Epigenetics; Molecular genetics; Molecular methods; Telomere length; qPCR

Mesh:

Year:  2018        PMID: 29623565     DOI: 10.1007/s11033-018-4175-y

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  22 in total

1.  Depression and telomere length: A meta-analysis.

Authors:  Kathryn K Ridout; Samuel J Ridout; Lawrence H Price; Srijan Sen; Audrey R Tyrka
Journal:  J Affect Disord       Date:  2015-12-02       Impact factor: 4.839

2.  Improving qPCR telomere length assays: Controlling for well position effects increases statistical power.

Authors:  Dan T A Eisenberg; Christopher W Kuzawa; M Geoffrey Hayes
Journal:  Am J Hum Biol       Date:  2015-03-10       Impact factor: 1.937

Review 3.  Perceived stress and telomere length: A systematic review, meta-analysis, and methodologic considerations for advancing the field.

Authors:  Maya B Mathur; Elissa Epel; Shelley Kind; Manisha Desai; Christine G Parks; Dale P Sandler; Nayer Khazeni
Journal:  Brain Behav Immun       Date:  2016-02-04       Impact factor: 7.217

4.  The association between depression and leukocyte telomere length: a meta-analysis.

Authors:  Nicola S Schutte; John M Malouff
Journal:  Depress Anxiety       Date:  2015-02-24       Impact factor: 6.505

5.  Meta-analysis of Telomere Length in Alzheimer's Disease.

Authors:  Diego A Forero; Yeimy González-Giraldo; Catalina López-Quintero; Luis J Castro-Vega; George E Barreto; George Perry
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2016-04-18       Impact factor: 6.053

6.  Telomere length in Parkinson's disease: A meta-analysis.

Authors:  Diego A Forero; Yeimy González-Giraldo; Catalina López-Quintero; Luis J Castro-Vega; George E Barreto; George Perry
Journal:  Exp Gerontol       Date:  2016-01-07       Impact factor: 4.032

7.  SYTO dyes and EvaGreen outperform SYBR Green in real-time PCR.

Authors:  Anne C Eischeid
Journal:  BMC Res Notes       Date:  2011-07-28

8.  Leukocyte telomere length variation due to DNA extraction method.

Authors:  Joshua Denham; Francine Z Marques; Fadi J Charchar
Journal:  BMC Res Notes       Date:  2014-12-04

9.  Blood and dried blood spot telomere length measurement by qPCR: assay considerations.

Authors:  DeAnna L Zanet; Sara Saberi; Laura Oliveira; Beheroze Sattha; Izabella Gadawski; Hélène C F Côté
Journal:  PLoS One       Date:  2013-02-25       Impact factor: 3.240

10.  Telomere length measurement by a novel monochrome multiplex quantitative PCR method.

Authors:  Richard M Cawthon
Journal:  Nucleic Acids Res       Date:  2009-01-07       Impact factor: 16.971

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  3 in total

Review 1.  Telomere length measurement by qPCR - Summary of critical factors and recommendations for assay design.

Authors:  Jue Lin; Dana L Smith; Kyle Esteves; Stacy Drury
Journal:  Psychoneuroendocrinology       Date:  2018-10-10       Impact factor: 4.905

2.  Uninterruptible Power Supply Improves Precision and External Validity of Telomere Length Measurement via qPCR.

Authors:  Waylon J Hastings; Dan T A Eisenberg; Idan Shalev
Journal:  Exp Results       Date:  2020-11-16

3.  Comparing qPCR and DNA methylation-based measurements of telomere length in a high-risk pediatric cohort.

Authors:  Waylon J Hastings; Laura Etzel; Christine M Heim; Jennie G Noll; Emma J Rose; Hannah M C Schreier; Chad E Shenk; Xin Tang; Idan Shalev
Journal:  Aging (Albany NY)       Date:  2022-01-24       Impact factor: 5.682

  3 in total

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