Literature DB >> 33711080

Research on multi-path dense networks for MRI spinal segmentation.

ShuFen Liang1, Huilin Liu1, Chen Chen1, Chuanbo Qin1, FangChen Yang1, Yue Feng1, Zhuosheng Lin1.   

Abstract

Accurate and robust segmentation of anatomical structures from magnetic resonance images is valuable in many computer-aided clinical tasks. Traditional codec networks are not satisfactory because of their low accuracy of edge segmentation, the low recognition rate of the target, and loss of detailed information. To address these problems, this study proposes a series of improved models for semantic segmentation and progressively optimizes them from the three aspects of convolution module, codec unit, and feature fusion. Instead of the standard convolution structure, we apply a new type of convolution module for the feature extraction. The networks integrate a multi-path method to obtain richer-detail edge information. Finally, a dense network is utilized to strengthen the ability of the feature fusion and integrate more different-level information. The evaluation of the Accuracy, Dice coefficient, and Jaccard index led to values of 0.9855, 0.9185, and 0.8507, respectively. These metrics of the best network increased by 1.0%, 4.0%, and 6.1%, respectively. Boundary F1-Score reached 0.9124 indicating that the proposed networks can segment smaller targets to obtain smoother edges. Our methods obtain more key information than traditional methods and achieve superiority in segmentation performance.

Entities:  

Year:  2021        PMID: 33711080      PMCID: PMC7954354          DOI: 10.1371/journal.pone.0248303

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  16 in total

Review 1.  Deep learning.

Authors:  Yann LeCun; Yoshua Bengio; Geoffrey Hinton
Journal:  Nature       Date:  2015-05-28       Impact factor: 49.962

2.  CE-Net: Context Encoder Network for 2D Medical Image Segmentation.

Authors:  Zaiwang Gu; Jun Cheng; Huazhu Fu; Kang Zhou; Huaying Hao; Yitian Zhao; Tianyang Zhang; Shenghua Gao; Jiang Liu
Journal:  IEEE Trans Med Imaging       Date:  2019-03-07       Impact factor: 10.048

3.  Fully Dense UNet for 2-D Sparse Photoacoustic Tomography Artifact Removal.

Authors:  Steven Guan; Amir A Khan; Siddhartha Sikdar; Parag V Chitnis
Journal:  IEEE J Biomed Health Inform       Date:  2019-04-23       Impact factor: 5.772

4.  Fully Convolutional Networks for Semantic Segmentation.

Authors:  Evan Shelhamer; Jonathan Long; Trevor Darrell
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2016-05-24       Impact factor: 6.226

5.  3D multi-scale FCN with random modality voxel dropout learning for Intervertebral Disc Localization and Segmentation from Multi-modality MR Images.

Authors:  Xiaomeng Li; Qi Dou; Hao Chen; Chi-Wing Fu; Xiaojuan Qi; Daniel L Belavý; Gabriele Armbrecht; Dieter Felsenberg; Guoyan Zheng; Pheng-Ann Heng
Journal:  Med Image Anal       Date:  2018-02-02       Impact factor: 8.545

6.  A Region-Based Deep Level Set Formulation for Vertebral Bone Segmentation of Osteoporotic Fractures.

Authors:  Faisal Rehman; Syed Irtiza Ali Shah; M Naveed Riaz; S Omer Gilani; Faiza R
Journal:  J Digit Imaging       Date:  2020-02       Impact factor: 4.056

7.  Use of 2D U-Net Convolutional Neural Networks for Automated Cartilage and Meniscus Segmentation of Knee MR Imaging Data to Determine Relaxometry and Morphometry.

Authors:  Berk Norman; Valentina Pedoia; Sharmila Majumdar
Journal:  Radiology       Date:  2018-03-27       Impact factor: 11.105

8.  Segmentation of pituitary adenoma: a graph-based method vs. a balloon inflation method.

Authors:  Jan Egger; Dženan Zukić; Bernd Freisleben; Andreas Kolb; Christopher Nimsky
Journal:  Comput Methods Programs Biomed       Date:  2012-12-23       Impact factor: 5.428

9.  Automatic Spine Tissue Segmentation from MRI Data Based on Cascade of Boosted Classifiers and Active Appearance Model.

Authors:  Dominik Gaweł; Paweł Główka; Tomasz Kotwicki; Michał Nowak
Journal:  Biomed Res Int       Date:  2018-04-29       Impact factor: 3.411

10.  Web-Based Spine Segmentation Using Deep Learning in Computed Tomography Images.

Authors:  Young Jae Kim; Bilegt Ganbold; Kwang Gi Kim
Journal:  Healthc Inform Res       Date:  2020-01-31
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  1 in total

1.  Spinopelvic measurements of sagittal balance with deep learning: systematic review and critical evaluation.

Authors:  Tomaž Vrtovec; Bulat Ibragimov
Journal:  Eur Spine J       Date:  2022-03-12       Impact factor: 2.721

  1 in total

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