Literature DB >> 33706173

Chromatin and transcriptional regulation by reversible RNA methylation.

Jiangbo Wei1, Chuan He2.   

Abstract

Dynamic RNA modifications have been a burgeoning area in the last decade since the concept of 'RNA epigenetics' was proposed [1]. N6-methyladenosine (m6A) is the most abundant mRNA modification in eukaryotic cells. It can be installed by 'writers', removed by 'erasers,' recognized by 'readers,' and dynamically regulate the fate of methylated RNA. Until recently, the roles of reversible RNA methylation in chromatin and transcriptional regulation were not adequately studied. We discuss the new discoveries and insights into the chromatin and transcriptional regulation by m6A through two pathways: 1) effects of m6A on mRNAs encoding histone modifiers and transcriptional factors; 2) m6A regulation of chromatin-associated regulatory RNAs. Additionally, we provide an outlook on how the transcriptional regulation by RNA m6A could add an additional critical layer to transcriptional regulation.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Transcriptional regulation; carRNAs; m(6)A

Mesh:

Substances:

Year:  2021        PMID: 33706173      PMCID: PMC8119380          DOI: 10.1016/j.ceb.2020.11.005

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.386


  65 in total

1.  RNA-methylation-dependent RNA processing controls the speed of the circadian clock.

Authors:  Jean-Michel Fustin; Masao Doi; Yoshiaki Yamaguchi; Hayashi Hida; Shinichi Nishimura; Minoru Yoshida; Takayuki Isagawa; Masaki Suimye Morioka; Hideaki Kakeya; Ichiro Manabe; Hitoshi Okamura
Journal:  Cell       Date:  2013-11-07       Impact factor: 41.582

2.  N6-Methyladenosine methyltransferase ZCCHC4 mediates ribosomal RNA methylation.

Authors:  Honghui Ma; Xiaoyun Wang; Jiabin Cai; Qing Dai; S Kundhavai Natchiar; Ruitu Lv; Kai Chen; Zhike Lu; Hao Chen; Yujiang Geno Shi; Fei Lan; Jia Fan; Bruno P Klaholz; Tao Pan; Yang Shi; Chuan He
Journal:  Nat Chem Biol       Date:  2018-12-10       Impact factor: 15.040

3.  N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.

Authors:  Xiao Wang; Boxuan Simen Zhao; Ian A Roundtree; Zhike Lu; Dali Han; Honghui Ma; Xiaocheng Weng; Kai Chen; Hailing Shi; Chuan He
Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

4.  The U6 snRNA m6A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention.

Authors:  Kathryn E Pendleton; Beibei Chen; Kuanqing Liu; Olga V Hunter; Yang Xie; Benjamin P Tu; Nicholas K Conrad
Journal:  Cell       Date:  2017-05-18       Impact factor: 41.582

5.  Ythdc2 is an N6-methyladenosine binding protein that regulates mammalian spermatogenesis.

Authors:  Phillip J Hsu; Yunfei Zhu; Honghui Ma; Yueshuai Guo; Xiaodan Shi; Yuanyuan Liu; Meijie Qi; Zhike Lu; Hailing Shi; Jianying Wang; Yiwei Cheng; Guanzheng Luo; Qing Dai; Mingxi Liu; Xuejiang Guo; Jiahao Sha; Bin Shen; Chuan He
Journal:  Cell Res       Date:  2017-08-15       Impact factor: 25.617

6.  Regulation of Co-transcriptional Pre-mRNA Splicing by m6A through the Low-Complexity Protein hnRNPG.

Authors:  Katherine I Zhou; Hailing Shi; Ruitu Lyu; Adam C Wylder; Żaneta Matuszek; Jessica N Pan; Chuan He; Marc Parisien; Tao Pan
Journal:  Mol Cell       Date:  2019-08-21       Impact factor: 17.970

7.  S-Adenosylmethionine Synthesis Is Regulated by Selective N6-Adenosine Methylation and mRNA Degradation Involving METTL16 and YTHDC1.

Authors:  Hiroki Shima; Mitsuyo Matsumoto; Yuma Ishigami; Masayuki Ebina; Akihiko Muto; Yuho Sato; Sayaka Kumagai; Kyoko Ochiai; Tsutomu Suzuki; Kazuhiko Igarashi
Journal:  Cell Rep       Date:  2017-12-19       Impact factor: 9.423

8.  N6-methyladenosine RNA modification regulates embryonic neural stem cell self-renewal through histone modifications.

Authors:  Yang Wang; Yue Li; Minghui Yue; Jun Wang; Sandeep Kumar; Robert J Wechsler-Reya; Zhaolei Zhang; Yuya Ogawa; Manolis Kellis; Gregg Duester; Jing Crystal Zhao
Journal:  Nat Neurosci       Date:  2018-01-15       Impact factor: 24.884

9.  Structural Basis for Cooperative Function of Mettl3 and Mettl14 Methyltransferases.

Authors:  Ping Wang; Katelyn A Doxtader; Yunsun Nam
Journal:  Mol Cell       Date:  2016-06-30       Impact factor: 17.970

10.  YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs.

Authors:  Ian A Roundtree; Guan-Zheng Luo; Zijie Zhang; Xiao Wang; Tao Zhou; Yiquang Cui; Jiahao Sha; Xingxu Huang; Laura Guerrero; Phil Xie; Emily He; Bin Shen; Chuan He
Journal:  Elife       Date:  2017-10-06       Impact factor: 8.140

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  10 in total

1.  METTL3 preferentially enhances non-m6A translation of epigenetic factors and promotes tumourigenesis.

Authors:  Xueju Wei; Yue Huo; Jingnan Pi; Yufeng Gao; Shuan Rao; Manman He; Qinglv Wei; Peng Song; Yiying Chen; Dongxu Lu; Wei Song; Junbo Liang; Lingjie Xu; Haixia Wang; Guolin Hong; Yuehong Guo; Yanmin Si; Jiayue Xu; Xiaoshuang Wang; Yanni Ma; Shuyang Yu; Dongling Zou; Jing Jin; Fang Wang; Jia Yu
Journal:  Nat Cell Biol       Date:  2022-08-04       Impact factor: 28.213

2.  Fear Stress During Pregnancy Affects Placental m6A-Modifying Enzyme Expression and Epigenetic Modification Levels.

Authors:  Qiyang Wang; Mingmin Pan; Tong Zhang; Yu Jiang; Peiyuan Zhao; Xihong Liu; Anqi Gao; Liping Yang; Junlin Hou
Journal:  Front Genet       Date:  2022-06-22       Impact factor: 4.772

3.  METTL3 modulates chromatin and transcription dynamics during cell fate transition.

Authors:  Xiao-Min Liu; Yuanhui Mao; Shen Wang; Jun Zhou; Shu-Bing Qian
Journal:  Cell Mol Life Sci       Date:  2022-10-20       Impact factor: 9.207

4.  Dynamic Transcriptome Profiling Reveals LncRNA-Centred Regulatory Networks in the Modulation of Pluripotency.

Authors:  Shen Wang; Jun Zhang; Yu'an Ding; Haotian Zhang; Xiang Wu; Lingci Huang; Junjie He; Jun Zhou; Xiao-Min Liu
Journal:  Front Cell Dev Biol       Date:  2022-05-11

Review 5.  The Emerging Role of RNA Modifications in the Regulation of Antiviral Innate Immunity.

Authors:  Jie Tong; Wuchao Zhang; Yuran Chen; Qiaoling Yuan; Ning-Ning Qin; Guosheng Qu
Journal:  Front Microbiol       Date:  2022-02-03       Impact factor: 5.640

Review 6.  Emerging Roles of N6-Methyladenosine Modification in Neurodevelopment and Neurodegeneration.

Authors:  Liqi Shu; Xiaoli Huang; Xuejun Cheng; Xuekun Li
Journal:  Cells       Date:  2021-10-09       Impact factor: 6.600

Review 7.  More than a duologue: In-depth insights into epitranscriptomics and ferroptosis.

Authors:  Justin Chak Ting Cheung; Guangzheng Deng; Nathalie Wong; Yujuan Dong; Simon Siu Man Ng
Journal:  Front Cell Dev Biol       Date:  2022-09-12

8.  Developmental Physiology: Grand Challenges.

Authors:  Warren Burggren
Journal:  Front Physiol       Date:  2021-06-10       Impact factor: 4.566

9.  Caspases Switch off the m6A RNA Modification Pathway to Foster the Replication of a Ubiquitous Human Tumor Virus.

Authors:  Kun Zhang; Yucheng Zhang; Yunash Maharjan; Febri Gunawan Sugiokto; Jun Wan; Renfeng Li
Journal:  mBio       Date:  2021-08-24       Impact factor: 7.867

Review 10.  Methyltransferases in the Pathogenesis of Keratinocyte Cancers.

Authors:  Eun Kyung Ko; Brian C Capell
Journal:  Cancers (Basel)       Date:  2021-07-07       Impact factor: 6.639

  10 in total

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