Literature DB >> 34856504

Plant transcription factors - being in the right place with the right company.

Lucia Strader1, Dolf Weijers2, Doris Wagner3.   

Abstract

Transcriptional regulation underlies many of the growth and developmental processes that shape plants as well as their adaptation to their environment. Key to transcriptional control are transcription factors, DNA-binding proteins that serve two essential functions: to find the appropriate DNA contact sites in their target genes; and to recruit other proteins to execute transcriptional transactions. In recent years, protein structural, genomic, bioinformatic, and proteomic analyses have led to new insights into how these central functions are regulated. Here, we review new findings relating to plant transcription factor function and to their role in shaping transcription in the context of chromatin.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Binding specificity; Chromatin; DNA binding; Pioneer transcription factor; Protein condensation; Transcription

Mesh:

Substances:

Year:  2021        PMID: 34856504      PMCID: PMC8844091          DOI: 10.1016/j.pbi.2021.102136

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  55 in total

Review 1.  The role of chromatin during transcription.

Authors:  Bing Li; Michael Carey; Jerry L Workman
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

2.  Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements.

Authors:  T Ulmasov; J Murfett; G Hagen; T J Guilfoyle
Journal:  Plant Cell       Date:  1997-11       Impact factor: 11.277

3.  DNA-binding specificities of plant transcription factors and their potential to define target genes.

Authors:  José M Franco-Zorrilla; Irene López-Vidriero; José L Carrasco; Marta Godoy; Pablo Vera; Roberto Solano
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-29       Impact factor: 11.205

Review 4.  Specifications of Targeting Heterochromatin Modifications in Plants.

Authors:  Jered M Wendte; Robert J Schmitz
Journal:  Mol Plant       Date:  2017-10-13       Impact factor: 13.164

5.  Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors.

Authors:  D Roeland Boer; Alejandra Freire-Rios; Willy A M van den Berg; Terrens Saaki; Iain W Manfield; Stefan Kepinski; Irene López-Vidrieo; Jose Manuel Franco-Zorrilla; Sacco C de Vries; Roberto Solano; Dolf Weijers; Miquel Coll
Journal:  Cell       Date:  2014-01-30       Impact factor: 41.582

Review 6.  PRC2 activity, recruitment, and silencing: a comparative perspective.

Authors:  Tomasz Bieluszewski; Jun Xiao; Yiman Yang; Doris Wagner
Journal:  Trends Plant Sci       Date:  2021-07-20       Impact factor: 18.313

Review 7.  Transcription Factor Dynamics.

Authors:  Feiyue Lu; Timothée Lionnet
Journal:  Cold Spring Harb Perspect Biol       Date:  2021-11-01       Impact factor: 10.005

8.  Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B-cell programming.

Authors:  Rui Li; Pierre Cauchy; Senthilkumar Ramamoorthy; Sören Boller; Lukas Chavez; Rudolf Grosschedl
Journal:  Genes Dev       Date:  2018-02-09       Impact factor: 11.361

9.  The ENCODE Blacklist: Identification of Problematic Regions of the Genome.

Authors:  Haley M Amemiya; Anshul Kundaje; Alan P Boyle
Journal:  Sci Rep       Date:  2019-06-27       Impact factor: 4.379

10.  Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function.

Authors:  Svetlana O Dodonova; Fangjie Zhu; Christian Dienemann; Jussi Taipale; Patrick Cramer
Journal:  Nature       Date:  2020-04-22       Impact factor: 49.962

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  8 in total

Review 1.  WRKY transcription factors: evolution, regulation, and functional diversity in plants.

Authors:  Pooja Goyal; Ritu Devi; Bhawana Verma; Shahnawaz Hussain; Palak Arora; Rubeena Tabassum; Suphla Gupta
Journal:  Protoplasma       Date:  2022-07-13       Impact factor: 3.186

Review 2.  Multifaceted roles of zinc finger proteins in regulating various agronomic traits in rice.

Authors:  Yifeng Huang; Longgang Du; Meixi Wang; Mengyun Ren; Shouwu Yu; Qianying Yang
Journal:  Front Plant Sci       Date:  2022-07-25       Impact factor: 6.627

3.  Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice.

Authors:  Nishu Gandass; Prafull Salvi
Journal:  Front Plant Sci       Date:  2022-07-29       Impact factor: 6.627

4.  Characterizations of a Class-I BASIC PENTACYSTEINE Gene Reveal Conserved Roles in the Transcriptional Repression of Genes Involved in Seed Development.

Authors:  Xianjin Ma; Yifan Yu; Zhikang Hu; Hu Huang; Sijia Li; Hengfu Yin
Journal:  Curr Issues Mol Biol       Date:  2022-09-07       Impact factor: 2.976

5.  Genome sequencing and analysis uncover the regulatory elements involved in the development and oil biosynthesis of Pongamia pinnata (L.) - A potential biodiesel feedstock.

Authors:  Rachapudi Venkata Sreeharsha; Shalini Mudalkar; Attipalli Ramachandra Reddy
Journal:  Front Plant Sci       Date:  2022-08-25       Impact factor: 6.627

Review 6.  Transcriptional regulation of plant innate immunity.

Authors:  Niels Aerts; Himanshu Chhillar; Pingtao Ding; Saskia C M Van Wees
Journal:  Essays Biochem       Date:  2022-09-30       Impact factor: 7.258

Review 7.  The Effects of Graphene-Family Nanomaterials on Plant Growth: A Review.

Authors:  Xiao Zhang; Huifen Cao; Haiyan Wang; Jianguo Zhao; Kun Gao; Jun Qiao; Jingwei Li; Sai Ge
Journal:  Nanomaterials (Basel)       Date:  2022-03-12       Impact factor: 5.076

8.  Comparative Transcriptome and Phytochemical Analysis Provides Insight into Triterpene Saponin Biosynthesis in Seeds and Flowers of the Tea Plant (Camellia sinensis).

Authors:  Cong Chen; Huanqing Zhu; Jiaxin Kang; Hasitha Kalhari Warusawitharana; Shuna Chen; Kaixi Wang; Fei Yu; Yuanyuan Wu; Puming He; Youying Tu; Bo Li
Journal:  Metabolites       Date:  2022-02-24
  8 in total

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