Literature DB >> 33671795

Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry.

Yichuan Liu1, Xiao Chang1, Hui-Qi Qu1, Lifeng Tian1, Joseph Glessner1, Jingchun Qu1, Dong Li1, Haijun Qiu1, Patrick Sleiman1,2, Hakon Hakonarson1,2,3.   

Abstract

Attention-deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder with poorly understood molecular mechanisms that results in significant impairment in children. In this study, we sought to assess the role of rare recurrent variants in non-European populations and outside of coding regions. We generated whole genome sequence (WGS) data on 875 individuals, including 205 ADHD cases and 670 non-ADHD controls. The cases included 116 African Americans (AA) and 89 European Americans (EA), and the controls included 408 AA and 262 EA. Multiple novel rare recurrent variants were identified in exonic regions, functionally classified as stop-gains and frameshifts for known ADHD genes. Deletion in introns of the protocadherins families and the ncRNA HGB8P were identified in two independent EA ADHD patients. A meta-analysis of the two ethnicities for differential ADHD recurrent variants compared to controls shows a small number of overlaps. These results suggest that rare recurrent variants in noncoding regions may be involved in the pathogenesis of ADHD in children of both AA and EA ancestry; thus, WGS could be a powerful discovery tool for studying the molecular mechanisms of ADHD.

Entities:  

Keywords:  attention-deficit hyperactivity disorder; genetic variants; noncoding regions; whole genome sequence

Mesh:

Substances:

Year:  2021        PMID: 33671795      PMCID: PMC7927037          DOI: 10.3390/genes12020310

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  43 in total

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Review 2.  Epigenetic dysregulation of protocadherins in human disease.

Authors:  Nady El Hajj; Marcus Dittrich; Thomas Haaf
Journal:  Semin Cell Dev Biol       Date:  2017-07-08       Impact factor: 7.727

3.  A method and server for predicting damaging missense mutations.

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Journal:  Nat Methods       Date:  2010-04       Impact factor: 28.547

Review 4.  Shared heritability of attention-deficit/hyperactivity disorder and autism spectrum disorder.

Authors:  Nanda N J Rommelse; Barbara Franke; Hilde M Geurts; Catharina A Hartman; Jan K Buitelaar
Journal:  Eur Child Adolesc Psychiatry       Date:  2010-02-11       Impact factor: 4.785

5.  Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.

Authors:  Klaus-Peter Lesch; Nina Timmesfeld; Tobias J Renner; Rebecca Halperin; Christoph Röser; T Trang Nguyen; David W Craig; Jasmin Romanos; Monika Heine; Jobst Meyer; Christine Freitag; Andreas Warnke; Marcel Romanos; Helmut Schäfer; Susanne Walitza; Andreas Reif; Dietrich A Stephan; Christian Jacob
Journal:  J Neural Transm (Vienna)       Date:  2008-10-07       Impact factor: 3.575

Review 6.  The genetics of attention deficit/hyperactivity disorder in adults, a review.

Authors:  B Franke; S V Faraone; P Asherson; J Buitelaar; C H D Bau; J A Ramos-Quiroga; E Mick; E H Grevet; S Johansson; J Haavik; K-P Lesch; B Cormand; A Reif
Journal:  Mol Psychiatry       Date:  2011-11-22       Impact factor: 15.992

7.  ADHDgene: a genetic database for attention deficit hyperactivity disorder.

Authors:  Liuyan Zhang; Suhua Chang; Zhao Li; Kunlin Zhang; Yang Du; Jurg Ott; Jing Wang
Journal:  Nucleic Acids Res       Date:  2011-11-10       Impact factor: 16.971

8.  Biological overlap of attention-deficit/hyperactivity disorder and autism spectrum disorder: evidence from copy number variants.

Authors:  Joanna Martin; Miriam Cooper; Marian L Hamshere; Andrew Pocklington; Stephen W Scherer; Lindsey Kent; Michael Gill; Michael J Owen; Nigel Williams; Michael C O'Donovan; Anita Thapar; Peter Holmans
Journal:  J Am Acad Child Adolesc Psychiatry       Date:  2014-04-21       Impact factor: 8.829

9.  ADHD pathogenesis in the immune, endocrine and nervous systems of juvenile and maturating SHR and WKY rats.

Authors:  Anna Kozłowska; Paweł Wojtacha; Maciej Równiak; Małgorzata Kolenkiewicz; Andrew Chih Wei Huang
Journal:  Psychopharmacology (Berl)       Date:  2019-02-08       Impact factor: 4.530

10.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

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  4 in total

1.  Exome sequencing analysis of Japanese autism spectrum disorder case-control sample supports an increased burden of synaptic function-related genes.

Authors:  Norio Ozaki; Jonathan Sebat; Hiroki Kimura; Masahiro Nakatochi; Branko Aleksic; James Guevara; Miho Toyama; Yu Hayashi; Hidekazu Kato; Itaru Kushima; Mako Morikawa; Kanako Ishizuka; Takashi Okada; Yoshinori Tsurusaki; Atsushi Fujita; Noriko Miyake; Tomoo Ogi; Atsushi Takata; Naomichi Matsumoto; Joseph Buxbaum
Journal:  Transl Psychiatry       Date:  2022-07-11       Impact factor: 7.989

Review 2.  Genetics in the ADHD Clinic: How Can Genetic Testing Support the Current Clinical Practice?

Authors:  Lívia Balogh; Attila J Pulay; János M Réthelyi
Journal:  Front Psychol       Date:  2022-03-08

Review 3.  Attention-deficit/hyperactive disorder updates.

Authors:  Miriam Kessi; Haolin Duan; Juan Xiong; Baiyu Chen; Fang He; Lifen Yang; Yanli Ma; Olumuyiwa A Bamgbade; Jing Peng; Fei Yin
Journal:  Front Mol Neurosci       Date:  2022-09-21       Impact factor: 6.261

4.  Deep learning prediction of attention-deficit hyperactivity disorder in African Americans by copy number variation.

Authors:  Yichuan Liu; Hui-Qi Qu; Xiao Chang; Kenny Nguyen; Jingchun Qu; Lifeng Tian; Joseph Glessner; Patrick Ma Sleiman; Hakon Hakonarson
Journal:  Exp Biol Med (Maywood)       Date:  2021-07-07
  4 in total

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